Experiment: LB_Aerobic_18HR_ZN18A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04875 and CSW01_04880 are separated by 5 nucleotides CSW01_04880 and CSW01_04885 are separated by 176 nucleotides CSW01_04885 and CSW01_04890 are separated by 129 nucleotides CSW01_04890 and CSW01_04895 are separated by 55 nucleotides
CSW01_04875: CSW01_04875 - DNA polymerase III subunit delta, at 1,015,736 to 1,016,764
_04875
CSW01_04880: CSW01_04880 - luciferase, at 1,016,770 to 1,017,384
_04880
CSW01_04885: CSW01_04885 - leucine--tRNA ligase, at 1,017,561 to 1,020,137
_04885
CSW01_04890: CSW01_04890 - hypothetical protein, at 1,020,267 to 1,020,737
_04890
CSW01_04895: CSW01_04895 - apolipoprotein N-acyltransferase, at 1,020,793 to 1,022,310
_04895
Position (kb) 1017
1018
1019
1020
1021 Strain fitness (log2 ratio) -1
0
1
2 at 1017.534 kb on - strand at 1020.243 kb on + strand at 1020.329 kb on - strand, within CSW01_04890 at 1020.329 kb on - strand, within CSW01_04890 at 1020.329 kb on - strand, within CSW01_04890 at 1020.340 kb on + strand, within CSW01_04890 at 1020.398 kb on - strand, within CSW01_04890 at 1020.419 kb on - strand, within CSW01_04890 at 1020.468 kb on - strand, within CSW01_04890 at 1020.468 kb on - strand, within CSW01_04890 at 1020.498 kb on - strand, within CSW01_04890 at 1020.522 kb on + strand, within CSW01_04890 at 1020.535 kb on - strand, within CSW01_04890 at 1020.596 kb on - strand, within CSW01_04890 at 1020.596 kb on - strand, within CSW01_04890 at 1020.639 kb on - strand, within CSW01_04890 at 1020.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A remove 1,017,534 - -0.7 1,020,243 + -1.4 1,020,329 - CSW01_04890 0.13 -0.4 1,020,329 - CSW01_04890 0.13 -0.0 1,020,329 - CSW01_04890 0.13 -1.0 1,020,340 + CSW01_04890 0.15 +0.7 1,020,398 - CSW01_04890 0.28 +0.7 1,020,419 - CSW01_04890 0.32 +0.1 1,020,468 - CSW01_04890 0.43 +0.0 1,020,468 - CSW01_04890 0.43 -0.7 1,020,498 - CSW01_04890 0.49 -0.2 1,020,522 + CSW01_04890 0.54 +0.0 1,020,535 - CSW01_04890 0.57 +0.1 1,020,596 - CSW01_04890 0.70 +2.0 1,020,596 - CSW01_04890 0.70 +0.7 1,020,639 - CSW01_04890 0.79 +0.2 1,020,716 - -0.0
Or see this region's nucleotide sequence