Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04660

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04655 and CSW01_04660 are separated by 236 nucleotidesCSW01_04660 and CSW01_04665 are separated by 79 nucleotides CSW01_04655: CSW01_04655 - HTH-type transcriptional regulator TreR, at 967,340 to 968,290 _04655 CSW01_04660: CSW01_04660 - PTS trehalose transporter subunit IIBC, at 968,527 to 969,963 _04660 CSW01_04665: CSW01_04665 - alpha,alpha-phosphotrehalase, at 970,043 to 971,731 _04665 Position (kb) 968 969 970Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 967.529 kb on + strand, within CSW01_04655at 967.579 kb on + strand, within CSW01_04655at 967.584 kb on + strand, within CSW01_04655at 967.584 kb on + strand, within CSW01_04655at 967.584 kb on + strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.676 kb on - strand, within CSW01_04655at 967.717 kb on - strand, within CSW01_04655at 967.739 kb on + strand, within CSW01_04655at 967.739 kb on + strand, within CSW01_04655at 967.756 kb on + strand, within CSW01_04655at 967.757 kb on - strand, within CSW01_04655at 967.764 kb on + strand, within CSW01_04655at 967.769 kb on - strand, within CSW01_04655at 967.769 kb on - strand, within CSW01_04655at 967.776 kb on - strand, within CSW01_04655at 967.823 kb on - strand, within CSW01_04655at 967.851 kb on - strand, within CSW01_04655at 967.910 kb on + strand, within CSW01_04655at 967.929 kb on - strand, within CSW01_04655at 968.080 kb on + strand, within CSW01_04655at 968.133 kb on + strand, within CSW01_04655at 968.241 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.298 kb on - strandat 968.299 kb on - strandat 968.492 kb on + strandat 968.541 kb on + strandat 968.591 kb on - strandat 968.629 kb on + strandat 968.646 kb on + strandat 968.652 kb on + strandat 968.683 kb on + strand, within CSW01_04660at 968.703 kb on - strand, within CSW01_04660at 968.857 kb on + strand, within CSW01_04660at 968.911 kb on + strand, within CSW01_04660at 968.996 kb on - strand, within CSW01_04660at 969.104 kb on + strand, within CSW01_04660at 969.104 kb on + strand, within CSW01_04660at 969.112 kb on - strand, within CSW01_04660at 969.119 kb on - strand, within CSW01_04660at 969.154 kb on - strand, within CSW01_04660at 969.228 kb on + strand, within CSW01_04660at 969.236 kb on - strand, within CSW01_04660at 969.241 kb on + strand, within CSW01_04660at 969.249 kb on - strand, within CSW01_04660at 969.249 kb on - strand, within CSW01_04660at 969.250 kb on + strand, within CSW01_04660at 969.256 kb on + strand, within CSW01_04660at 969.264 kb on - strand, within CSW01_04660at 969.264 kb on - strand, within CSW01_04660at 969.349 kb on + strand, within CSW01_04660at 969.383 kb on - strand, within CSW01_04660at 969.449 kb on + strand, within CSW01_04660at 969.459 kb on + strand, within CSW01_04660at 969.478 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.576 kb on + strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.584 kb on - strand, within CSW01_04660at 969.623 kb on + strand, within CSW01_04660at 969.623 kb on + strand, within CSW01_04660at 969.631 kb on - strand, within CSW01_04660at 969.655 kb on - strand, within CSW01_04660at 969.692 kb on - strand, within CSW01_04660at 969.745 kb on - strand, within CSW01_04660at 969.769 kb on + strand, within CSW01_04660at 969.777 kb on - strand, within CSW01_04660at 969.792 kb on - strand, within CSW01_04660at 969.854 kb on - strandat 969.898 kb on + strandat 969.898 kb on + strandat 969.915 kb on + strandat 969.921 kb on - strandat 969.923 kb on - strandat 970.040 kb on + strandat 970.050 kb on + strandat 970.731 kb on + strand, within CSW01_04665at 970.845 kb on - strand, within CSW01_04665

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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967,529 + CSW01_04655 0.20 +0.4
967,579 + CSW01_04655 0.25 +2.2
967,584 + CSW01_04655 0.26 +0.2
967,584 + CSW01_04655 0.26 +0.9
967,584 + CSW01_04655 0.26 +1.0
967,592 - CSW01_04655 0.26 +3.3
967,592 - CSW01_04655 0.26 +1.2
967,592 - CSW01_04655 0.26 +0.5
967,592 - CSW01_04655 0.26 +2.1
967,592 - CSW01_04655 0.26 +0.8
967,676 - CSW01_04655 0.35 +1.0
967,717 - CSW01_04655 0.40 +1.5
967,739 + CSW01_04655 0.42 +0.6
967,739 + CSW01_04655 0.42 -0.3
967,756 + CSW01_04655 0.44 +0.9
967,757 - CSW01_04655 0.44 -0.0
967,764 + CSW01_04655 0.45 +0.7
967,769 - CSW01_04655 0.45 +1.3
967,769 - CSW01_04655 0.45 +1.0
967,776 - CSW01_04655 0.46 +1.0
967,823 - CSW01_04655 0.51 -0.2
967,851 - CSW01_04655 0.54 +0.9
967,910 + CSW01_04655 0.60 +0.5
967,929 - CSW01_04655 0.62 +1.1
968,080 + CSW01_04655 0.78 +0.6
968,133 + CSW01_04655 0.83 +1.8
968,241 + -0.4
968,246 + +3.5
968,246 + +1.4
968,246 + +0.3
968,246 + +0.4
968,246 + +0.3
968,246 + +0.2
968,246 + +1.3
968,246 + -0.1
968,246 + +0.3
968,246 + -0.1
968,254 - +0.4
968,254 - +0.8
968,254 - +1.2
968,254 - +0.4
968,254 - +3.9
968,254 - +0.5
968,298 - -0.9
968,299 - -0.3
968,492 + -0.3
968,541 + -0.5
968,591 - -0.2
968,629 + -0.3
968,646 + -2.1
968,652 + -0.7
968,683 + CSW01_04660 0.11 +0.1
968,703 - CSW01_04660 0.12 -2.2
968,857 + CSW01_04660 0.23 -3.3
968,911 + CSW01_04660 0.27 -0.7
968,996 - CSW01_04660 0.33 -0.1
969,104 + CSW01_04660 0.40 -0.4
969,104 + CSW01_04660 0.40 -0.9
969,112 - CSW01_04660 0.41 -0.3
969,119 - CSW01_04660 0.41 -1.4
969,154 - CSW01_04660 0.44 -1.3
969,228 + CSW01_04660 0.49 -1.7
969,236 - CSW01_04660 0.49 -0.6
969,241 + CSW01_04660 0.50 -0.3
969,249 - CSW01_04660 0.50 -2.5
969,249 - CSW01_04660 0.50 -1.4
969,250 + CSW01_04660 0.50 -1.3
969,256 + CSW01_04660 0.51 -0.8
969,264 - CSW01_04660 0.51 +0.7
969,264 - CSW01_04660 0.51 -0.4
969,349 + CSW01_04660 0.57 +0.8
969,383 - CSW01_04660 0.60 -0.7
969,449 + CSW01_04660 0.64 -1.0
969,459 + CSW01_04660 0.65 -0.3
969,478 + CSW01_04660 0.66 -0.4
969,576 + CSW01_04660 0.73 -0.8
969,576 + CSW01_04660 0.73 -1.1
969,576 + CSW01_04660 0.73 -0.9
969,576 + CSW01_04660 0.73 -0.9
969,576 + CSW01_04660 0.73 +0.5
969,576 + CSW01_04660 0.73 +1.4
969,576 + CSW01_04660 0.73 -0.8
969,576 + CSW01_04660 0.73 -2.1
969,576 + CSW01_04660 0.73 -2.6
969,576 + CSW01_04660 0.73 -0.7
969,584 - CSW01_04660 0.74 +0.2
969,584 - CSW01_04660 0.74 -1.8
969,584 - CSW01_04660 0.74 +0.2
969,584 - CSW01_04660 0.74 +0.1
969,584 - CSW01_04660 0.74 -1.6
969,584 - CSW01_04660 0.74 +0.1
969,584 - CSW01_04660 0.74 -0.5
969,584 - CSW01_04660 0.74 -2.6
969,584 - CSW01_04660 0.74 -0.9
969,623 + CSW01_04660 0.76 -1.4
969,623 + CSW01_04660 0.76 +2.0
969,631 - CSW01_04660 0.77 -0.7
969,655 - CSW01_04660 0.78 -0.4
969,692 - CSW01_04660 0.81 -0.1
969,745 - CSW01_04660 0.85 -0.9
969,769 + CSW01_04660 0.86 -0.9
969,777 - CSW01_04660 0.87 -0.1
969,792 - CSW01_04660 0.88 -0.3
969,854 - -2.4
969,898 + +1.4
969,898 + -0.1
969,915 + -1.2
969,921 - -0.6
969,923 - -0.6
970,040 + -0.5
970,050 + +0.4
970,731 + CSW01_04665 0.41 +0.4
970,845 - CSW01_04665 0.47 +0.4

Or see this region's nucleotide sequence