Experiment: LB_Aerobic_18HR_ZN18A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04560 and CSW01_04565 are separated by 19 nucleotides CSW01_04565 and CSW01_04570 are separated by 41 nucleotides CSW01_04570 and CSW01_04575 are separated by 314 nucleotides
CSW01_04560: CSW01_04560 - 1-deoxy-D-xylulose-5-phosphate synthase, at 946,262 to 948,142
_04560
CSW01_04565: CSW01_04565 - (2E,6E)-farnesyl diphosphate synthase, at 948,162 to 949,046
_04565
CSW01_04570: CSW01_04570 - exodeoxyribonuclease 7 small subunit, at 949,088 to 949,330
_04570
CSW01_04575: CSW01_04575 - flagellar motor protein PomA, at 949,645 to 950,409
_04575
Position (kb) 949
950 Strain fitness (log2 ratio) -2
-1
0
1
2 at 949.101 kb on - strand at 949.165 kb on - strand, within CSW01_04570 at 949.167 kb on - strand, within CSW01_04570 at 949.167 kb on - strand, within CSW01_04570 at 949.181 kb on - strand, within CSW01_04570 at 949.191 kb on - strand, within CSW01_04570 at 949.191 kb on - strand, within CSW01_04570 at 949.196 kb on - strand, within CSW01_04570 at 949.233 kb on - strand, within CSW01_04570 at 949.430 kb on - strand at 949.479 kb on + strand at 949.488 kb on - strand at 949.503 kb on + strand at 949.503 kb on - strand at 949.548 kb on - strand at 949.713 kb on - strand at 949.713 kb on - strand at 949.799 kb on - strand, within CSW01_04575 at 949.831 kb on + strand, within CSW01_04575 at 949.837 kb on + strand, within CSW01_04575 at 949.845 kb on + strand, within CSW01_04575 at 949.845 kb on + strand, within CSW01_04575 at 949.875 kb on - strand, within CSW01_04575 at 949.951 kb on - strand, within CSW01_04575 at 949.966 kb on + strand, within CSW01_04575 at 949.980 kb on + strand, within CSW01_04575 at 949.999 kb on + strand, within CSW01_04575 at 950.007 kb on - strand, within CSW01_04575 at 950.015 kb on - strand, within CSW01_04575 at 950.040 kb on - strand, within CSW01_04575 at 950.117 kb on - strand, within CSW01_04575 at 950.121 kb on + strand, within CSW01_04575 at 950.179 kb on - strand, within CSW01_04575 at 950.193 kb on + strand, within CSW01_04575 at 950.200 kb on + strand, within CSW01_04575 at 950.200 kb on + strand, within CSW01_04575 at 950.208 kb on - strand, within CSW01_04575
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A remove 949,101 - -2.3 949,165 - CSW01_04570 0.32 -1.6 949,167 - CSW01_04570 0.33 +0.2 949,167 - CSW01_04570 0.33 -0.6 949,181 - CSW01_04570 0.38 +0.4 949,191 - CSW01_04570 0.42 -1.4 949,191 - CSW01_04570 0.42 -0.3 949,196 - CSW01_04570 0.44 -1.5 949,233 - CSW01_04570 0.60 +0.4 949,430 - +0.1 949,479 + +1.3 949,488 - -0.4 949,503 + +0.2 949,503 - +0.2 949,548 - -0.1 949,713 - +1.1 949,713 - +1.5 949,799 - CSW01_04575 0.20 +0.6 949,831 + CSW01_04575 0.24 +0.9 949,837 + CSW01_04575 0.25 +1.6 949,845 + CSW01_04575 0.26 +1.1 949,845 + CSW01_04575 0.26 +1.1 949,875 - CSW01_04575 0.30 -0.1 949,951 - CSW01_04575 0.40 +0.4 949,966 + CSW01_04575 0.42 +1.3 949,980 + CSW01_04575 0.44 +0.3 949,999 + CSW01_04575 0.46 +1.5 950,007 - CSW01_04575 0.47 +0.4 950,015 - CSW01_04575 0.48 +1.0 950,040 - CSW01_04575 0.52 +2.3 950,117 - CSW01_04575 0.62 +1.0 950,121 + CSW01_04575 0.62 +0.7 950,179 - CSW01_04575 0.70 +2.0 950,193 + CSW01_04575 0.72 +1.2 950,200 + CSW01_04575 0.73 +1.5 950,200 + CSW01_04575 0.73 +1.0 950,208 - CSW01_04575 0.74 -0.3
Or see this region's nucleotide sequence