Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03180

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03175 and CSW01_03180 are separated by 236 nucleotidesCSW01_03180 and CSW01_03185 are separated by 264 nucleotides CSW01_03175: CSW01_03175 - penicillin-binding protein 1B, at 627,504 to 629,837 _03175 CSW01_03180: CSW01_03180 - serine protease, at 630,074 to 632,368 _03180 CSW01_03185: CSW01_03185 - aconitate hydratase B, at 632,633 to 635,230 _03185 Position (kb) 630 631 632 633Strain fitness (log2 ratio) -2 -1 0 1 2at 629.074 kb on + strand, within CSW01_03175at 629.144 kb on + strand, within CSW01_03175at 629.144 kb on + strand, within CSW01_03175at 629.154 kb on + strand, within CSW01_03175at 629.154 kb on + strand, within CSW01_03175at 629.159 kb on + strand, within CSW01_03175at 629.162 kb on - strand, within CSW01_03175at 629.162 kb on - strand, within CSW01_03175at 629.164 kb on + strand, within CSW01_03175at 629.201 kb on + strand, within CSW01_03175at 629.230 kb on + strand, within CSW01_03175at 629.242 kb on - strand, within CSW01_03175at 629.259 kb on + strand, within CSW01_03175at 629.346 kb on - strand, within CSW01_03175at 629.348 kb on + strand, within CSW01_03175at 629.356 kb on - strand, within CSW01_03175at 629.356 kb on - strand, within CSW01_03175at 629.373 kb on - strand, within CSW01_03175at 629.438 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.470 kb on - strand, within CSW01_03175at 629.470 kb on - strand, within CSW01_03175at 629.470 kb on - strand, within CSW01_03175at 629.470 kb on - strand, within CSW01_03175at 629.478 kb on - strand, within CSW01_03175at 629.524 kb on - strand, within CSW01_03175at 629.547 kb on - strand, within CSW01_03175at 629.576 kb on + strand, within CSW01_03175at 629.628 kb on - strandat 629.666 kb on + strandat 629.688 kb on + strandat 629.696 kb on - strandat 629.706 kb on - strandat 629.716 kb on - strandat 629.734 kb on + strandat 629.757 kb on + strandat 629.767 kb on + strandat 629.775 kb on - strandat 629.789 kb on + strandat 629.798 kb on + strandat 629.991 kb on - strandat 630.016 kb on - strandat 630.089 kb on + strandat 630.089 kb on + strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.099 kb on + strandat 630.104 kb on + strandat 630.104 kb on + strandat 630.119 kb on - strandat 630.125 kb on + strandat 630.125 kb on + strandat 630.125 kb on + strandat 630.146 kb on + strandat 630.177 kb on - strandat 630.220 kb on + strandat 630.237 kb on + strandat 630.296 kb on - strandat 630.332 kb on - strand, within CSW01_03180at 630.354 kb on - strand, within CSW01_03180at 630.367 kb on - strand, within CSW01_03180at 630.390 kb on + strand, within CSW01_03180at 630.390 kb on + strand, within CSW01_03180at 630.398 kb on - strand, within CSW01_03180at 630.398 kb on - strand, within CSW01_03180at 630.465 kb on + strand, within CSW01_03180at 630.705 kb on + strand, within CSW01_03180at 630.713 kb on - strand, within CSW01_03180at 630.793 kb on + strand, within CSW01_03180at 630.815 kb on + strand, within CSW01_03180at 630.821 kb on - strand, within CSW01_03180at 630.882 kb on - strand, within CSW01_03180at 630.890 kb on - strand, within CSW01_03180at 631.042 kb on - strand, within CSW01_03180at 631.084 kb on + strand, within CSW01_03180at 631.084 kb on + strand, within CSW01_03180at 631.084 kb on + strand, within CSW01_03180at 631.084 kb on + strand, within CSW01_03180at 631.091 kb on + strand, within CSW01_03180at 631.092 kb on - strand, within CSW01_03180at 631.092 kb on - strand, within CSW01_03180at 631.092 kb on - strand, within CSW01_03180at 631.092 kb on - strand, within CSW01_03180at 631.157 kb on + strand, within CSW01_03180at 631.182 kb on + strand, within CSW01_03180at 631.244 kb on + strand, within CSW01_03180at 631.398 kb on + strand, within CSW01_03180at 631.426 kb on + strand, within CSW01_03180at 631.426 kb on + strand, within CSW01_03180at 631.426 kb on + strand, within CSW01_03180at 631.434 kb on - strand, within CSW01_03180at 631.434 kb on - strand, within CSW01_03180at 631.434 kb on - strand, within CSW01_03180at 631.434 kb on - strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.440 kb on + strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.448 kb on - strand, within CSW01_03180at 631.483 kb on + strand, within CSW01_03180at 631.527 kb on + strand, within CSW01_03180at 631.589 kb on + strand, within CSW01_03180at 631.706 kb on + strand, within CSW01_03180at 631.960 kb on - strand, within CSW01_03180at 632.019 kb on + strand, within CSW01_03180at 632.027 kb on - strand, within CSW01_03180at 632.027 kb on - strand, within CSW01_03180at 632.175 kb on + strandat 632.175 kb on + strandat 632.175 kb on + strandat 632.218 kb on + strandat 632.240 kb on + strandat 632.248 kb on - strandat 632.248 kb on - strandat 632.323 kb on + strandat 632.366 kb on - strandat 632.374 kb on + strandat 632.446 kb on - strandat 632.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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629,074 + CSW01_03175 0.67 -0.7
629,144 + CSW01_03175 0.70 -0.2
629,144 + CSW01_03175 0.70 -0.2
629,154 + CSW01_03175 0.71 +0.9
629,154 + CSW01_03175 0.71 +1.0
629,159 + CSW01_03175 0.71 +0.5
629,162 - CSW01_03175 0.71 -0.7
629,162 - CSW01_03175 0.71 +0.7
629,164 + CSW01_03175 0.71 -0.4
629,201 + CSW01_03175 0.73 +0.9
629,230 + CSW01_03175 0.74 +0.2
629,242 - CSW01_03175 0.74 -0.0
629,259 + CSW01_03175 0.75 -0.0
629,346 - CSW01_03175 0.79 +0.0
629,348 + CSW01_03175 0.79 +0.2
629,356 - CSW01_03175 0.79 -1.4
629,356 - CSW01_03175 0.79 -0.1
629,373 - CSW01_03175 0.80 +0.0
629,438 + CSW01_03175 0.83 -0.8
629,462 + CSW01_03175 0.84 +0.1
629,462 + CSW01_03175 0.84 -0.3
629,462 + CSW01_03175 0.84 -1.1
629,462 + CSW01_03175 0.84 -1.0
629,462 + CSW01_03175 0.84 +0.2
629,462 + CSW01_03175 0.84 +0.9
629,470 - CSW01_03175 0.84 -0.1
629,470 - CSW01_03175 0.84 +0.3
629,470 - CSW01_03175 0.84 -0.6
629,470 - CSW01_03175 0.84 +0.1
629,478 - CSW01_03175 0.85 +0.5
629,524 - CSW01_03175 0.87 -1.3
629,547 - CSW01_03175 0.88 -1.3
629,576 + CSW01_03175 0.89 +0.1
629,628 - -0.9
629,666 + +1.0
629,688 + +0.7
629,696 - -0.1
629,706 - +1.1
629,716 - +0.5
629,734 + +0.4
629,757 + +0.4
629,767 + -0.3
629,775 - +0.7
629,789 + +1.6
629,798 + +0.8
629,991 - +0.3
630,016 - +0.7
630,089 + -0.7
630,089 + -0.9
630,097 - +0.3
630,097 - -1.2
630,097 - -0.7
630,097 - -0.3
630,097 - -1.5
630,097 - +0.2
630,097 - +0.7
630,097 - -0.6
630,099 + -0.3
630,104 + -0.2
630,104 + -0.2
630,119 - -0.8
630,125 + -0.6
630,125 + +0.1
630,125 + -0.7
630,146 + -0.0
630,177 - -0.2
630,220 + +0.1
630,237 + -0.8
630,296 - -0.1
630,332 - CSW01_03180 0.11 -0.8
630,354 - CSW01_03180 0.12 -0.7
630,367 - CSW01_03180 0.13 -1.5
630,390 + CSW01_03180 0.14 -0.6
630,390 + CSW01_03180 0.14 -0.2
630,398 - CSW01_03180 0.14 -2.3
630,398 - CSW01_03180 0.14 +0.6
630,465 + CSW01_03180 0.17 -0.4
630,705 + CSW01_03180 0.27 +0.1
630,713 - CSW01_03180 0.28 -1.0
630,793 + CSW01_03180 0.31 -0.5
630,815 + CSW01_03180 0.32 +0.5
630,821 - CSW01_03180 0.33 -1.2
630,882 - CSW01_03180 0.35 +0.9
630,890 - CSW01_03180 0.36 -1.3
631,042 - CSW01_03180 0.42 -0.5
631,084 + CSW01_03180 0.44 +0.3
631,084 + CSW01_03180 0.44 -1.4
631,084 + CSW01_03180 0.44 -1.8
631,084 + CSW01_03180 0.44 +0.5
631,091 + CSW01_03180 0.44 -0.8
631,092 - CSW01_03180 0.44 -1.3
631,092 - CSW01_03180 0.44 +0.4
631,092 - CSW01_03180 0.44 +0.5
631,092 - CSW01_03180 0.44 -0.1
631,157 + CSW01_03180 0.47 +0.2
631,182 + CSW01_03180 0.48 +0.3
631,244 + CSW01_03180 0.51 -0.6
631,398 + CSW01_03180 0.58 -0.0
631,426 + CSW01_03180 0.59 -0.1
631,426 + CSW01_03180 0.59 -0.5
631,426 + CSW01_03180 0.59 -0.7
631,434 - CSW01_03180 0.59 -0.9
631,434 - CSW01_03180 0.59 +1.4
631,434 - CSW01_03180 0.59 +0.8
631,434 - CSW01_03180 0.59 -0.6
631,440 + CSW01_03180 0.60 +0.4
631,440 + CSW01_03180 0.60 +0.4
631,440 + CSW01_03180 0.60 +2.4
631,440 + CSW01_03180 0.60 -0.5
631,440 + CSW01_03180 0.60 +0.0
631,440 + CSW01_03180 0.60 -0.9
631,440 + CSW01_03180 0.60 -0.7
631,440 + CSW01_03180 0.60 -2.5
631,440 + CSW01_03180 0.60 +0.4
631,440 + CSW01_03180 0.60 -0.6
631,440 + CSW01_03180 0.60 -0.7
631,440 + CSW01_03180 0.60 -0.6
631,440 + CSW01_03180 0.60 +0.1
631,440 + CSW01_03180 0.60 -1.0
631,440 + CSW01_03180 0.60 -1.3
631,440 + CSW01_03180 0.60 -0.1
631,440 + CSW01_03180 0.60 +0.7
631,440 + CSW01_03180 0.60 +0.7
631,440 + CSW01_03180 0.60 -0.7
631,440 + CSW01_03180 0.60 -0.5
631,440 + CSW01_03180 0.60 +1.2
631,440 + CSW01_03180 0.60 -1.1
631,440 + CSW01_03180 0.60 -0.9
631,440 + CSW01_03180 0.60 -0.1
631,440 + CSW01_03180 0.60 -0.6
631,440 + CSW01_03180 0.60 -1.3
631,448 - CSW01_03180 0.60 -1.6
631,448 - CSW01_03180 0.60 -0.5
631,448 - CSW01_03180 0.60 -0.5
631,448 - CSW01_03180 0.60 +0.4
631,448 - CSW01_03180 0.60 -0.3
631,448 - CSW01_03180 0.60 -2.2
631,448 - CSW01_03180 0.60 -0.3
631,448 - CSW01_03180 0.60 -0.6
631,448 - CSW01_03180 0.60 -0.5
631,448 - CSW01_03180 0.60 -0.6
631,448 - CSW01_03180 0.60 -0.9
631,448 - CSW01_03180 0.60 -0.0
631,448 - CSW01_03180 0.60 -0.8
631,448 - CSW01_03180 0.60 -0.7
631,448 - CSW01_03180 0.60 -0.6
631,448 - CSW01_03180 0.60 -0.8
631,448 - CSW01_03180 0.60 -1.0
631,448 - CSW01_03180 0.60 -0.6
631,448 - CSW01_03180 0.60 -1.6
631,448 - CSW01_03180 0.60 +0.0
631,448 - CSW01_03180 0.60 +0.1
631,448 - CSW01_03180 0.60 -1.0
631,448 - CSW01_03180 0.60 -0.1
631,448 - CSW01_03180 0.60 -0.7
631,448 - CSW01_03180 0.60 -0.9
631,448 - CSW01_03180 0.60 +0.0
631,483 + CSW01_03180 0.61 -0.5
631,527 + CSW01_03180 0.63 -2.1
631,589 + CSW01_03180 0.66 -0.7
631,706 + CSW01_03180 0.71 +0.0
631,960 - CSW01_03180 0.82 -0.7
632,019 + CSW01_03180 0.85 -0.2
632,027 - CSW01_03180 0.85 -0.6
632,027 - CSW01_03180 0.85 +0.1
632,175 + -0.5
632,175 + -0.8
632,175 + +0.4
632,218 + -0.7
632,240 + +0.3
632,248 - -0.0
632,248 - -0.2
632,323 + -1.5
632,366 - -0.7
632,374 + -0.0
632,446 - -0.4
632,550 + -0.5

Or see this region's nucleotide sequence