Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03040

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03030 and CSW01_03035 are separated by 223 nucleotidesCSW01_03035 and CSW01_03040 are separated by 15 nucleotidesCSW01_03040 and CSW01_03045 are separated by 327 nucleotidesCSW01_03045 and CSW01_03050 overlap by 1 nucleotides CSW01_03030: CSW01_03030 - cell division protein ZapE, at 600,469 to 601,572 _03030 CSW01_03035: CSW01_03035 - 50S ribosomal protein L13, at 601,796 to 602,224 _03035 CSW01_03040: CSW01_03040 - 30S ribosomal protein S9, at 602,240 to 602,632 _03040 CSW01_03045: CSW01_03045 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 602,960 to 603,553 _03045 CSW01_03050: CSW01_03050 - cytochrome b, at 603,553 to 604,818 _03050 Position (kb) 602 603Strain fitness (log2 ratio) -2 -1 0 1at 601.310 kb on + strand, within CSW01_03030at 601.453 kb on + strand, within CSW01_03030at 601.589 kb on + strandat 601.597 kb on - strandat 602.748 kb on + strandat 602.938 kb on + strandat 603.140 kb on - strand, within CSW01_03045at 603.263 kb on - strand, within CSW01_03045at 603.265 kb on + strand, within CSW01_03045at 603.335 kb on + strand, within CSW01_03045at 603.335 kb on + strand, within CSW01_03045at 603.343 kb on - strand, within CSW01_03045at 603.343 kb on - strand, within CSW01_03045at 603.479 kb on - strand, within CSW01_03045

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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601,310 + CSW01_03030 0.76 +0.4
601,453 + CSW01_03030 0.89 -0.3
601,589 + +0.0
601,597 - +0.9
602,748 + -0.1
602,938 + +0.5
603,140 - CSW01_03045 0.30 +0.9
603,263 - CSW01_03045 0.51 -1.1
603,265 + CSW01_03045 0.51 +0.9
603,335 + CSW01_03045 0.63 +1.1
603,335 + CSW01_03045 0.63 -0.5
603,343 - CSW01_03045 0.64 +0.0
603,343 - CSW01_03045 0.64 -1.9
603,479 - CSW01_03045 0.87 +1.0

Or see this region's nucleotide sequence