Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02870

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02865 and CSW01_02870 are separated by 166 nucleotidesCSW01_02870 and CSW01_02875 are separated by 133 nucleotides CSW01_02865: CSW01_02865 - sulfate/thiosulfate import ATP-binding protein CysA, at 571,500 to 572,630 _02865 CSW01_02870: CSW01_02870 - CinA family protein, at 572,797 to 573,303 _02870 CSW01_02875: CSW01_02875 - DNA recombination/repair protein RecA, at 573,437 to 574,501 _02875 Position (kb) 572 573 574Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 571.819 kb on + strand, within CSW01_02865at 571.825 kb on - strand, within CSW01_02865at 571.892 kb on + strand, within CSW01_02865at 571.907 kb on + strand, within CSW01_02865at 571.915 kb on - strand, within CSW01_02865at 571.915 kb on - strand, within CSW01_02865at 571.915 kb on - strand, within CSW01_02865at 571.968 kb on + strand, within CSW01_02865at 572.097 kb on + strand, within CSW01_02865at 572.097 kb on + strand, within CSW01_02865at 572.098 kb on + strand, within CSW01_02865at 572.099 kb on - strand, within CSW01_02865at 572.106 kb on + strand, within CSW01_02865at 572.106 kb on - strand, within CSW01_02865at 572.168 kb on + strand, within CSW01_02865at 572.168 kb on + strand, within CSW01_02865at 572.176 kb on - strand, within CSW01_02865at 572.176 kb on - strand, within CSW01_02865at 572.178 kb on + strand, within CSW01_02865at 572.225 kb on + strand, within CSW01_02865at 572.233 kb on - strand, within CSW01_02865at 572.263 kb on - strand, within CSW01_02865at 572.337 kb on - strand, within CSW01_02865at 572.337 kb on - strand, within CSW01_02865at 572.343 kb on - strand, within CSW01_02865at 572.371 kb on - strand, within CSW01_02865at 572.378 kb on - strand, within CSW01_02865at 572.407 kb on + strand, within CSW01_02865at 572.407 kb on + strand, within CSW01_02865at 572.415 kb on - strand, within CSW01_02865at 572.415 kb on - strand, within CSW01_02865at 572.424 kb on + strand, within CSW01_02865at 572.432 kb on - strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.514 kb on + strand, within CSW01_02865at 572.522 kb on - strandat 572.562 kb on + strandat 572.580 kb on + strandat 572.580 kb on + strandat 572.610 kb on + strandat 572.618 kb on - strandat 572.646 kb on + strandat 572.826 kb on + strandat 572.834 kb on - strandat 572.857 kb on + strand, within CSW01_02870at 572.865 kb on - strand, within CSW01_02870at 572.882 kb on - strand, within CSW01_02870at 572.890 kb on + strand, within CSW01_02870at 572.890 kb on + strand, within CSW01_02870at 572.905 kb on - strand, within CSW01_02870at 572.933 kb on + strand, within CSW01_02870at 572.995 kb on - strand, within CSW01_02870at 573.043 kb on - strand, within CSW01_02870at 573.043 kb on - strand, within CSW01_02870at 573.053 kb on - strand, within CSW01_02870at 573.075 kb on + strand, within CSW01_02870at 573.077 kb on - strand, within CSW01_02870at 573.088 kb on + strand, within CSW01_02870at 573.169 kb on + strand, within CSW01_02870at 573.169 kb on + strand, within CSW01_02870at 573.169 kb on + strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.183 kb on - strand, within CSW01_02870at 573.185 kb on + strand, within CSW01_02870at 573.200 kb on + strand, within CSW01_02870at 573.201 kb on + strand, within CSW01_02870at 573.202 kb on - strand, within CSW01_02870at 573.235 kb on + strand, within CSW01_02870at 573.244 kb on - strand, within CSW01_02870at 573.288 kb on - strandat 573.367 kb on + strandat 573.395 kb on - strandat 573.410 kb on + strandat 573.432 kb on + strandat 573.511 kb on - strandat 573.521 kb on + strandat 573.529 kb on - strandat 573.691 kb on + strand, within CSW01_02875at 573.692 kb on + strand, within CSW01_02875at 573.692 kb on + strand, within CSW01_02875at 573.692 kb on + strand, within CSW01_02875at 573.700 kb on - strand, within CSW01_02875at 573.700 kb on - strand, within CSW01_02875at 573.832 kb on - strand, within CSW01_02875at 573.835 kb on + strand, within CSW01_02875at 573.843 kb on - strand, within CSW01_02875at 573.857 kb on + strand, within CSW01_02875at 573.965 kb on - strand, within CSW01_02875at 573.993 kb on - strand, within CSW01_02875at 574.111 kb on - strand, within CSW01_02875at 574.203 kb on - strand, within CSW01_02875at 574.232 kb on + strand, within CSW01_02875at 574.232 kb on + strand, within CSW01_02875at 574.232 kb on + strand, within CSW01_02875at 574.232 kb on + strand, within CSW01_02875at 574.240 kb on - strand, within CSW01_02875at 574.255 kb on + strand, within CSW01_02875at 574.260 kb on + strand, within CSW01_02875at 574.268 kb on - strand, within CSW01_02875

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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571,819 + CSW01_02865 0.28 -0.4
571,825 - CSW01_02865 0.29 +0.8
571,892 + CSW01_02865 0.35 +0.2
571,907 + CSW01_02865 0.36 -0.1
571,915 - CSW01_02865 0.37 +0.2
571,915 - CSW01_02865 0.37 +1.8
571,915 - CSW01_02865 0.37 -0.3
571,968 + CSW01_02865 0.41 +0.5
572,097 + CSW01_02865 0.53 +1.5
572,097 + CSW01_02865 0.53 +0.8
572,098 + CSW01_02865 0.53 -0.2
572,099 - CSW01_02865 0.53 -2.5
572,106 + CSW01_02865 0.54 +0.2
572,106 - CSW01_02865 0.54 -2.0
572,168 + CSW01_02865 0.59 +0.6
572,168 + CSW01_02865 0.59 -0.5
572,176 - CSW01_02865 0.60 -2.3
572,176 - CSW01_02865 0.60 +0.9
572,178 + CSW01_02865 0.60 -0.8
572,225 + CSW01_02865 0.64 +0.7
572,233 - CSW01_02865 0.65 -0.4
572,263 - CSW01_02865 0.67 +1.0
572,337 - CSW01_02865 0.74 -0.0
572,337 - CSW01_02865 0.74 +0.5
572,343 - CSW01_02865 0.75 -1.3
572,371 - CSW01_02865 0.77 +1.0
572,378 - CSW01_02865 0.78 -0.8
572,407 + CSW01_02865 0.80 -1.0
572,407 + CSW01_02865 0.80 +0.3
572,415 - CSW01_02865 0.81 -0.1
572,415 - CSW01_02865 0.81 +0.9
572,424 + CSW01_02865 0.82 +0.4
572,432 - CSW01_02865 0.82 +0.2
572,449 + CSW01_02865 0.84 -0.7
572,449 + CSW01_02865 0.84 +0.8
572,449 + CSW01_02865 0.84 -0.3
572,457 - CSW01_02865 0.85 -0.3
572,457 - CSW01_02865 0.85 -0.1
572,457 - CSW01_02865 0.85 -0.7
572,457 - CSW01_02865 0.85 +0.4
572,514 + CSW01_02865 0.90 -1.1
572,522 - +0.3
572,562 + +0.4
572,580 + +1.5
572,580 + +0.7
572,610 + -0.5
572,618 - +0.4
572,646 + +0.4
572,826 + -0.5
572,834 - +1.3
572,857 + CSW01_02870 0.12 -0.2
572,865 - CSW01_02870 0.13 -0.3
572,882 - CSW01_02870 0.17 +0.2
572,890 + CSW01_02870 0.18 -0.4
572,890 + CSW01_02870 0.18 +0.0
572,905 - CSW01_02870 0.21 -1.0
572,933 + CSW01_02870 0.27 +0.1
572,995 - CSW01_02870 0.39 +0.2
573,043 - CSW01_02870 0.49 -0.4
573,043 - CSW01_02870 0.49 -1.1
573,053 - CSW01_02870 0.50 -0.9
573,075 + CSW01_02870 0.55 -1.3
573,077 - CSW01_02870 0.55 +0.7
573,088 + CSW01_02870 0.57 -0.5
573,169 + CSW01_02870 0.73 +0.1
573,169 + CSW01_02870 0.73 -0.9
573,169 + CSW01_02870 0.73 -2.1
573,177 - CSW01_02870 0.75 -0.3
573,177 - CSW01_02870 0.75 -0.5
573,177 - CSW01_02870 0.75 +0.8
573,177 - CSW01_02870 0.75 +1.0
573,183 - CSW01_02870 0.76 +0.5
573,185 + CSW01_02870 0.77 +1.3
573,200 + CSW01_02870 0.79 +1.3
573,201 + CSW01_02870 0.80 +0.2
573,202 - CSW01_02870 0.80 -0.1
573,235 + CSW01_02870 0.86 +3.5
573,244 - CSW01_02870 0.88 -0.7
573,288 - -0.1
573,367 + +0.1
573,395 - -1.1
573,410 + +0.5
573,432 + -1.6
573,511 - -1.6
573,521 + -1.5
573,529 - -2.1
573,691 + CSW01_02875 0.24 -1.2
573,692 + CSW01_02875 0.24 +0.1
573,692 + CSW01_02875 0.24 -1.8
573,692 + CSW01_02875 0.24 -3.0
573,700 - CSW01_02875 0.25 -2.3
573,700 - CSW01_02875 0.25 -2.0
573,832 - CSW01_02875 0.37 -1.8
573,835 + CSW01_02875 0.37 -1.0
573,843 - CSW01_02875 0.38 -1.8
573,857 + CSW01_02875 0.39 -1.6
573,965 - CSW01_02875 0.50 -1.5
573,993 - CSW01_02875 0.52 -0.0
574,111 - CSW01_02875 0.63 -0.7
574,203 - CSW01_02875 0.72 -1.1
574,232 + CSW01_02875 0.75 -2.9
574,232 + CSW01_02875 0.75 -2.2
574,232 + CSW01_02875 0.75 -2.0
574,232 + CSW01_02875 0.75 -3.3
574,240 - CSW01_02875 0.75 +1.9
574,255 + CSW01_02875 0.77 +1.0
574,260 + CSW01_02875 0.77 -3.3
574,268 - CSW01_02875 0.78 -0.2

Or see this region's nucleotide sequence