Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01850

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01845 and CSW01_01850 are separated by 2 nucleotidesCSW01_01850 and CSW01_01855 are separated by 42 nucleotidesCSW01_01855 and CSW01_01860 are separated by 40 nucleotidesCSW01_01860 and CSW01_01865 are separated by 2 nucleotides CSW01_01845: CSW01_01845 - protease modulator HflK, at 370,521 to 371,708 _01845 CSW01_01850: CSW01_01850 - protease modulator HflC, at 371,711 to 372,691 _01850 CSW01_01855: CSW01_01855 - DUF2065 domain-containing protein, at 372,734 to 372,940 _01855 CSW01_01860: CSW01_01860 - SlyX protein, at 372,981 to 373,208 _01860 CSW01_01865: CSW01_01865 - hypothetical protein, at 373,211 to 374,194 _01865 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2 3at 370.729 kb on + strand, within CSW01_01845at 370.784 kb on - strand, within CSW01_01845at 370.807 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.815 kb on - strand, within CSW01_01845at 370.820 kb on - strand, within CSW01_01845at 370.820 kb on - strand, within CSW01_01845at 370.820 kb on - strand, within CSW01_01845at 370.859 kb on - strand, within CSW01_01845at 370.924 kb on + strand, within CSW01_01845at 370.925 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.955 kb on + strand, within CSW01_01845at 370.975 kb on - strand, within CSW01_01845at 370.977 kb on + strand, within CSW01_01845at 371.055 kb on - strand, within CSW01_01845at 371.081 kb on - strand, within CSW01_01845at 371.146 kb on + strand, within CSW01_01845at 371.201 kb on + strand, within CSW01_01845at 371.221 kb on - strand, within CSW01_01845at 371.298 kb on + strand, within CSW01_01845at 371.333 kb on - strand, within CSW01_01845at 371.333 kb on - strand, within CSW01_01845at 371.363 kb on + strand, within CSW01_01845at 371.432 kb on + strand, within CSW01_01845at 371.440 kb on - strand, within CSW01_01845at 371.490 kb on + strand, within CSW01_01845at 371.498 kb on - strand, within CSW01_01845at 371.668 kb on + strandat 371.683 kb on + strandat 371.691 kb on + strandat 371.691 kb on + strandat 371.699 kb on - strandat 371.699 kb on - strandat 371.699 kb on - strandat 371.699 kb on - strandat 371.733 kb on + strandat 371.743 kb on + strandat 371.751 kb on - strandat 371.761 kb on - strandat 371.884 kb on + strand, within CSW01_01850at 371.890 kb on - strand, within CSW01_01850at 371.901 kb on + strand, within CSW01_01850at 371.901 kb on + strand, within CSW01_01850at 372.060 kb on + strand, within CSW01_01850at 372.114 kb on + strand, within CSW01_01850at 372.214 kb on + strand, within CSW01_01850at 372.261 kb on - strand, within CSW01_01850at 372.389 kb on + strand, within CSW01_01850at 372.464 kb on - strand, within CSW01_01850at 372.479 kb on - strand, within CSW01_01850at 372.632 kb on + strandat 372.648 kb on - strandat 372.704 kb on - strandat 372.719 kb on - strandat 372.729 kb on - strandat 372.762 kb on + strand, within CSW01_01855at 372.762 kb on + strand, within CSW01_01855at 372.780 kb on + strand, within CSW01_01855at 372.863 kb on - strand, within CSW01_01855at 372.928 kb on - strandat 373.012 kb on + strand, within CSW01_01860at 373.020 kb on - strand, within CSW01_01860at 373.089 kb on - strand, within CSW01_01860at 373.123 kb on - strand, within CSW01_01860at 373.186 kb on - strandat 373.230 kb on + strandat 373.237 kb on - strandat 373.243 kb on + strandat 373.243 kb on + strandat 373.248 kb on + strandat 373.292 kb on + strandat 373.300 kb on - strandat 373.369 kb on - strand, within CSW01_01865at 373.382 kb on + strand, within CSW01_01865at 373.477 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.485 kb on - strand, within CSW01_01865at 373.490 kb on - strand, within CSW01_01865at 373.615 kb on - strand, within CSW01_01865at 373.625 kb on - strand, within CSW01_01865at 373.653 kb on + strand, within CSW01_01865

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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370,729 + CSW01_01845 0.18 -1.8
370,784 - CSW01_01845 0.22 -1.5
370,807 + CSW01_01845 0.24 -0.9
370,812 + CSW01_01845 0.24 -0.8
370,812 + CSW01_01845 0.24 -0.9
370,812 + CSW01_01845 0.24 -1.6
370,812 + CSW01_01845 0.24 -0.3
370,815 - CSW01_01845 0.25 +0.5
370,820 - CSW01_01845 0.25 +0.2
370,820 - CSW01_01845 0.25 -2.2
370,820 - CSW01_01845 0.25 +0.6
370,859 - CSW01_01845 0.28 -0.8
370,924 + CSW01_01845 0.34 -0.7
370,925 - CSW01_01845 0.34 -0.7
370,932 - CSW01_01845 0.35 +1.1
370,932 - CSW01_01845 0.35 -2.4
370,932 - CSW01_01845 0.35 -2.2
370,932 - CSW01_01845 0.35 -1.4
370,932 - CSW01_01845 0.35 -2.4
370,955 + CSW01_01845 0.37 -1.0
370,975 - CSW01_01845 0.38 -0.5
370,977 + CSW01_01845 0.38 -2.1
371,055 - CSW01_01845 0.45 -0.2
371,081 - CSW01_01845 0.47 -1.5
371,146 + CSW01_01845 0.53 -2.1
371,201 + CSW01_01845 0.57 -1.7
371,221 - CSW01_01845 0.59 -1.7
371,298 + CSW01_01845 0.65 -2.1
371,333 - CSW01_01845 0.68 -2.5
371,333 - CSW01_01845 0.68 -1.7
371,363 + CSW01_01845 0.71 -0.4
371,432 + CSW01_01845 0.77 -0.1
371,440 - CSW01_01845 0.77 -0.9
371,490 + CSW01_01845 0.82 -1.4
371,498 - CSW01_01845 0.82 -0.9
371,668 + -2.0
371,683 + -1.0
371,691 + -1.0
371,691 + -0.9
371,699 - -1.2
371,699 - -0.2
371,699 - -1.9
371,699 - -1.0
371,733 + +1.0
371,743 + -0.6
371,751 - -2.6
371,761 - -2.1
371,884 + CSW01_01850 0.18 -0.7
371,890 - CSW01_01850 0.18 -0.3
371,901 + CSW01_01850 0.19 +0.6
371,901 + CSW01_01850 0.19 -1.5
372,060 + CSW01_01850 0.36 +0.3
372,114 + CSW01_01850 0.41 -2.0
372,214 + CSW01_01850 0.51 +0.4
372,261 - CSW01_01850 0.56 -1.8
372,389 + CSW01_01850 0.69 -1.4
372,464 - CSW01_01850 0.77 -2.0
372,479 - CSW01_01850 0.78 -1.3
372,632 + -0.7
372,648 - -0.8
372,704 - -0.6
372,719 - -1.5
372,729 - +0.2
372,762 + CSW01_01855 0.14 +0.1
372,762 + CSW01_01855 0.14 -0.3
372,780 + CSW01_01855 0.22 +0.7
372,863 - CSW01_01855 0.62 -0.6
372,928 - -2.2
373,012 + CSW01_01860 0.14 +0.0
373,020 - CSW01_01860 0.17 +0.0
373,089 - CSW01_01860 0.47 -0.1
373,123 - CSW01_01860 0.62 +1.2
373,186 - -0.3
373,230 + -0.4
373,237 - +0.6
373,243 + +1.2
373,243 + -0.6
373,248 + -0.1
373,292 + +3.2
373,300 - -1.2
373,369 - CSW01_01865 0.16 +1.8
373,382 + CSW01_01865 0.17 +0.8
373,477 + CSW01_01865 0.27 +0.2
373,482 + CSW01_01865 0.28 +0.5
373,482 + CSW01_01865 0.28 +0.1
373,482 + CSW01_01865 0.28 -1.0
373,482 + CSW01_01865 0.28 +0.0
373,482 + CSW01_01865 0.28 +0.8
373,485 - CSW01_01865 0.28 +0.3
373,490 - CSW01_01865 0.28 +0.7
373,615 - CSW01_01865 0.41 +1.0
373,625 - CSW01_01865 0.42 -1.0
373,653 + CSW01_01865 0.45 +0.4

Or see this region's nucleotide sequence