Experiment: LB_Aerobic_18HR_ZN18A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01420 and CSW01_01425 are separated by 75 nucleotides CSW01_01425 and CSW01_01430 are separated by 30 nucleotides CSW01_01430 and CSW01_01435 are separated by 226 nucleotides CSW01_01435 and CSW01_01440 are separated by 699 nucleotides
CSW01_01420: CSW01_01420 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 279,627 to 281,219
_01420
CSW01_01425: CSW01_01425 - phosphoribosylamine--glycine ligase, at 281,295 to 281,474
_01425
CSW01_01430: CSW01_01430 - Zn(2+)-responsive transcriptional regulator, at 281,505 to 281,906
_01430
CSW01_01435: CSW01_01435 - transcriptional regulator CadC, at 282,133 to 283,692
_01435
CSW01_01440: CSW01_01440 - lysine:cadaverine antiporter, at 284,392 to 285,729
_01440
Position (kb) 282
283
284 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 281.189 kb on - strand at 281.203 kb on + strand at 281.203 kb on + strand at 281.254 kb on + strand at 281.264 kb on - strand at 281.269 kb on + strand at 281.269 kb on + strand at 281.269 kb on - strand at 281.292 kb on + strand at 281.294 kb on - strand at 281.340 kb on - strand, within CSW01_01425 at 281.486 kb on - strand at 281.523 kb on + strand at 281.679 kb on + strand, within CSW01_01430 at 281.679 kb on + strand, within CSW01_01430 at 281.686 kb on + strand, within CSW01_01430 at 281.694 kb on - strand, within CSW01_01430 at 281.694 kb on - strand, within CSW01_01430 at 281.694 kb on - strand, within CSW01_01430 at 281.694 kb on - strand, within CSW01_01430 at 281.694 kb on - strand, within CSW01_01430 at 281.696 kb on + strand, within CSW01_01430 at 281.703 kb on - strand, within CSW01_01430 at 281.733 kb on + strand, within CSW01_01430 at 281.733 kb on + strand, within CSW01_01430 at 281.743 kb on + strand, within CSW01_01430 at 281.767 kb on + strand, within CSW01_01430 at 281.767 kb on + strand, within CSW01_01430 at 281.767 kb on + strand, within CSW01_01430 at 281.775 kb on - strand, within CSW01_01430 at 281.775 kb on - strand, within CSW01_01430 at 281.775 kb on - strand, within CSW01_01430 at 281.802 kb on + strand, within CSW01_01430 at 281.817 kb on - strand, within CSW01_01430 at 281.848 kb on + strand, within CSW01_01430 at 281.848 kb on + strand, within CSW01_01430 at 281.856 kb on - strand, within CSW01_01430 at 282.067 kb on - strand at 282.160 kb on + strand at 282.173 kb on + strand at 282.174 kb on - strand at 282.181 kb on - strand at 282.183 kb on + strand at 282.202 kb on + strand at 282.210 kb on + strand at 282.210 kb on + strand at 282.210 kb on + strand at 282.210 kb on + strand at 282.210 kb on + strand at 282.215 kb on + strand at 282.218 kb on - strand at 282.218 kb on - strand at 282.218 kb on - strand at 282.271 kb on + strand at 282.278 kb on + strand at 282.278 kb on + strand at 282.309 kb on - strand, within CSW01_01435 at 282.309 kb on - strand, within CSW01_01435 at 282.357 kb on + strand, within CSW01_01435 at 282.365 kb on - strand, within CSW01_01435 at 282.390 kb on + strand, within CSW01_01435 at 282.411 kb on + strand, within CSW01_01435 at 282.411 kb on + strand, within CSW01_01435 at 282.411 kb on + strand, within CSW01_01435 at 282.419 kb on - strand, within CSW01_01435 at 282.422 kb on + strand, within CSW01_01435 at 282.537 kb on - strand, within CSW01_01435 at 282.577 kb on - strand, within CSW01_01435 at 282.593 kb on - strand, within CSW01_01435 at 282.638 kb on + strand, within CSW01_01435 at 282.638 kb on + strand, within CSW01_01435 at 282.643 kb on + strand, within CSW01_01435 at 282.646 kb on - strand, within CSW01_01435 at 282.651 kb on - strand, within CSW01_01435 at 282.667 kb on + strand, within CSW01_01435 at 282.667 kb on + strand, within CSW01_01435 at 282.700 kb on + strand, within CSW01_01435 at 282.700 kb on + strand, within CSW01_01435 at 282.715 kb on - strand, within CSW01_01435 at 282.722 kb on + strand, within CSW01_01435 at 282.745 kb on - strand, within CSW01_01435 at 282.791 kb on + strand, within CSW01_01435 at 282.791 kb on + strand, within CSW01_01435 at 282.791 kb on + strand, within CSW01_01435 at 282.799 kb on - strand, within CSW01_01435 at 282.799 kb on - strand, within CSW01_01435 at 282.799 kb on - strand, within CSW01_01435 at 282.830 kb on - strand, within CSW01_01435 at 282.884 kb on + strand, within CSW01_01435 at 282.912 kb on - strand, within CSW01_01435 at 282.966 kb on + strand, within CSW01_01435 at 283.021 kb on + strand, within CSW01_01435 at 283.021 kb on + strand, within CSW01_01435 at 283.021 kb on + strand, within CSW01_01435 at 283.029 kb on - strand, within CSW01_01435 at 283.029 kb on - strand, within CSW01_01435 at 283.033 kb on + strand, within CSW01_01435 at 283.043 kb on - strand, within CSW01_01435 at 283.043 kb on - strand, within CSW01_01435 at 283.049 kb on + strand, within CSW01_01435 at 283.090 kb on - strand, within CSW01_01435 at 283.090 kb on - strand, within CSW01_01435 at 283.091 kb on + strand, within CSW01_01435 at 283.091 kb on + strand, within CSW01_01435 at 283.104 kb on - strand, within CSW01_01435 at 283.135 kb on + strand, within CSW01_01435 at 283.136 kb on + strand, within CSW01_01435 at 283.136 kb on + strand, within CSW01_01435 at 283.136 kb on + strand, within CSW01_01435 at 283.142 kb on + strand, within CSW01_01435 at 283.189 kb on - strand, within CSW01_01435 at 283.298 kb on + strand, within CSW01_01435 at 283.298 kb on + strand, within CSW01_01435 at 283.298 kb on + strand, within CSW01_01435 at 283.298 kb on + strand, within CSW01_01435 at 283.306 kb on - strand, within CSW01_01435 at 283.306 kb on - strand, within CSW01_01435 at 283.375 kb on - strand, within CSW01_01435 at 283.411 kb on - strand, within CSW01_01435 at 283.413 kb on + strand, within CSW01_01435 at 283.413 kb on + strand, within CSW01_01435 at 283.464 kb on + strand, within CSW01_01435 at 283.464 kb on + strand, within CSW01_01435 at 283.472 kb on - strand, within CSW01_01435 at 283.472 kb on - strand, within CSW01_01435 at 283.472 kb on - strand, within CSW01_01435 at 283.496 kb on - strand, within CSW01_01435 at 283.529 kb on - strand, within CSW01_01435 at 283.529 kb on - strand, within CSW01_01435 at 283.541 kb on + strand at 283.547 kb on + strand at 283.549 kb on - strand at 283.560 kb on - strand at 283.676 kb on - strand at 283.695 kb on - strand at 283.759 kb on - strand at 283.791 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.824 kb on + strand at 283.870 kb on + strand at 284.080 kb on - strand at 284.080 kb on - strand at 284.080 kb on - strand at 284.089 kb on + strand at 284.100 kb on - strand at 284.216 kb on + strand at 284.281 kb on + strand at 284.281 kb on + strand at 284.281 kb on + strand at 284.281 kb on + strand at 284.289 kb on - strand at 284.304 kb on + strand at 284.336 kb on + strand at 284.342 kb on - strand at 284.434 kb on + strand at 284.465 kb on + strand at 284.465 kb on + strand at 284.470 kb on - strand at 284.473 kb on - strand at 284.473 kb on - strand at 284.475 kb on + strand at 284.478 kb on - strand at 284.488 kb on - strand at 284.595 kb on + strand, within CSW01_01440 at 284.617 kb on + strand, within CSW01_01440 at 284.625 kb on - strand, within CSW01_01440 at 284.625 kb on - strand, within CSW01_01440
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A remove 281,189 - +0.3 281,203 + -0.0 281,203 + +0.2 281,254 + +2.4 281,264 - -0.7 281,269 + +0.2 281,269 + +0.5 281,269 - -0.3 281,292 + -0.4 281,294 - +0.1 281,340 - CSW01_01425 0.25 -1.4 281,486 - -0.5 281,523 + +0.2 281,679 + CSW01_01430 0.43 -1.1 281,679 + CSW01_01430 0.43 +1.2 281,686 + CSW01_01430 0.45 +0.1 281,694 - CSW01_01430 0.47 +1.1 281,694 - CSW01_01430 0.47 -0.0 281,694 - CSW01_01430 0.47 +0.2 281,694 - CSW01_01430 0.47 -0.6 281,694 - CSW01_01430 0.47 -0.3 281,696 + CSW01_01430 0.48 +0.1 281,703 - CSW01_01430 0.49 -0.7 281,733 + CSW01_01430 0.57 -0.5 281,733 + CSW01_01430 0.57 -0.2 281,743 + CSW01_01430 0.59 +1.0 281,767 + CSW01_01430 0.65 -0.1 281,767 + CSW01_01430 0.65 +0.1 281,767 + CSW01_01430 0.65 -0.2 281,775 - CSW01_01430 0.67 -0.5 281,775 - CSW01_01430 0.67 -0.8 281,775 - CSW01_01430 0.67 -0.1 281,802 + CSW01_01430 0.74 +0.5 281,817 - CSW01_01430 0.78 +0.0 281,848 + CSW01_01430 0.85 +0.5 281,848 + CSW01_01430 0.85 +0.3 281,856 - CSW01_01430 0.87 -0.2 282,067 - -1.1 282,160 + -1.7 282,173 + -0.1 282,174 - -1.5 282,181 - -1.5 282,183 + +1.2 282,202 + -0.5 282,210 + -0.5 282,210 + -0.8 282,210 + -1.7 282,210 + -0.5 282,210 + -1.1 282,215 + -3.9 282,218 - -0.3 282,218 - -1.0 282,218 - -2.0 282,271 + -0.6 282,278 + -1.8 282,278 + -0.5 282,309 - CSW01_01435 0.11 +0.3 282,309 - CSW01_01435 0.11 +0.3 282,357 + CSW01_01435 0.14 -1.3 282,365 - CSW01_01435 0.15 -1.1 282,390 + CSW01_01435 0.16 -0.3 282,411 + CSW01_01435 0.18 -0.1 282,411 + CSW01_01435 0.18 -1.1 282,411 + CSW01_01435 0.18 -2.0 282,419 - CSW01_01435 0.18 -1.2 282,422 + CSW01_01435 0.19 +0.7 282,537 - CSW01_01435 0.26 +0.7 282,577 - CSW01_01435 0.28 -0.1 282,593 - CSW01_01435 0.29 -1.1 282,638 + CSW01_01435 0.32 +0.3 282,638 + CSW01_01435 0.32 -1.7 282,643 + CSW01_01435 0.33 -1.0 282,646 - CSW01_01435 0.33 -0.3 282,651 - CSW01_01435 0.33 -1.7 282,667 + CSW01_01435 0.34 -0.2 282,667 + CSW01_01435 0.34 +0.4 282,700 + CSW01_01435 0.36 -1.9 282,700 + CSW01_01435 0.36 -0.2 282,715 - CSW01_01435 0.37 -0.6 282,722 + CSW01_01435 0.38 -0.3 282,745 - CSW01_01435 0.39 +0.2 282,791 + CSW01_01435 0.42 -0.2 282,791 + CSW01_01435 0.42 +0.3 282,791 + CSW01_01435 0.42 -1.5 282,799 - CSW01_01435 0.43 -1.1 282,799 - CSW01_01435 0.43 -0.7 282,799 - CSW01_01435 0.43 -1.3 282,830 - CSW01_01435 0.45 -0.8 282,884 + CSW01_01435 0.48 -0.5 282,912 - CSW01_01435 0.50 -1.2 282,966 + CSW01_01435 0.53 -1.7 283,021 + CSW01_01435 0.57 +0.2 283,021 + CSW01_01435 0.57 -0.3 283,021 + CSW01_01435 0.57 +0.0 283,029 - CSW01_01435 0.57 -0.5 283,029 - CSW01_01435 0.57 -1.3 283,033 + CSW01_01435 0.58 -0.5 283,043 - CSW01_01435 0.58 -1.2 283,043 - CSW01_01435 0.58 +0.5 283,049 + CSW01_01435 0.59 -0.3 283,090 - CSW01_01435 0.61 -0.2 283,090 - CSW01_01435 0.61 -0.3 283,091 + CSW01_01435 0.61 -0.0 283,091 + CSW01_01435 0.61 -1.3 283,104 - CSW01_01435 0.62 -1.3 283,135 + CSW01_01435 0.64 -0.6 283,136 + CSW01_01435 0.64 -0.5 283,136 + CSW01_01435 0.64 -1.6 283,136 + CSW01_01435 0.64 -0.9 283,142 + CSW01_01435 0.65 -2.9 283,189 - CSW01_01435 0.68 -0.7 283,298 + CSW01_01435 0.75 -0.2 283,298 + CSW01_01435 0.75 -0.0 283,298 + CSW01_01435 0.75 -1.0 283,298 + CSW01_01435 0.75 -1.5 283,306 - CSW01_01435 0.75 -0.6 283,306 - CSW01_01435 0.75 -0.7 283,375 - CSW01_01435 0.80 -0.2 283,411 - CSW01_01435 0.82 -1.2 283,413 + CSW01_01435 0.82 -2.8 283,413 + CSW01_01435 0.82 -0.2 283,464 + CSW01_01435 0.85 -1.1 283,464 + CSW01_01435 0.85 +0.0 283,472 - CSW01_01435 0.86 +0.7 283,472 - CSW01_01435 0.86 -1.1 283,472 - CSW01_01435 0.86 +0.1 283,496 - CSW01_01435 0.87 -0.8 283,529 - CSW01_01435 0.89 -0.3 283,529 - CSW01_01435 0.89 +0.7 283,541 + -0.4 283,547 + +0.3 283,549 - +0.3 283,560 - -0.3 283,676 - +0.5 283,695 - -0.4 283,759 - -2.2 283,791 + -0.1 283,803 + -0.2 283,803 + +0.4 283,803 + -0.8 283,803 + +0.3 283,803 + -0.1 283,803 + -0.3 283,803 + +0.1 283,803 + -0.3 283,803 + -0.7 283,803 + -0.5 283,803 + -0.2 283,803 + -0.8 283,803 + +0.2 283,803 + +0.4 283,803 + +0.6 283,803 + -0.7 283,803 + +0.6 283,803 + +0.4 283,803 + +0.3 283,803 + -0.3 283,811 - -0.5 283,811 - -0.8 283,811 - +0.5 283,811 - +0.5 283,811 - -0.7 283,811 - +0.1 283,811 - +0.2 283,811 - +1.1 283,811 - -0.3 283,811 - -0.6 283,811 - -0.1 283,811 - +1.3 283,811 - -0.1 283,811 - -0.2 283,811 - +0.6 283,811 - +0.8 283,811 - +0.2 283,811 - +1.0 283,811 - +0.1 283,811 - -1.4 283,811 - -0.2 283,824 + +0.8 283,870 + -1.3 284,080 - -1.3 284,080 - -0.2 284,080 - -1.2 284,089 + -1.2 284,100 - -0.5 284,216 + -0.8 284,281 + +0.3 284,281 + -2.1 284,281 + -0.4 284,281 + +0.7 284,289 - -1.0 284,304 + -1.1 284,336 + -1.2 284,342 - +0.8 284,434 + +0.2 284,465 + -1.0 284,465 + +0.9 284,470 - -0.8 284,473 - +0.4 284,473 - -0.2 284,475 + -1.3 284,478 - +0.4 284,488 - -1.7 284,595 + CSW01_01440 0.15 -2.0 284,617 + CSW01_01440 0.17 +0.5 284,625 - CSW01_01440 0.17 -0.0 284,625 - CSW01_01440 0.17 -0.1
Or see this region's nucleotide sequence