Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01215

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01205 and CSW01_01210 are separated by 3 nucleotidesCSW01_01210 and CSW01_01215 overlap by 4 nucleotidesCSW01_01215 and CSW01_01220 overlap by 4 nucleotides CSW01_01205: CSW01_01205 - wavE lipopolysaccharide synthesis family protein, at 232,710 to 233,669 _01205 CSW01_01210: CSW01_01210 - LPS biosynthesis protein WavE, at 233,673 to 234,602 _01210 CSW01_01215: CSW01_01215 - capsular biosynthesis protein, at 234,599 to 235,342 _01215 CSW01_01220: CSW01_01220 - capsular biosynthesis protein, at 235,339 to 236,922 _01220 Position (kb) 234 235 236Strain fitness (log2 ratio) -2 -1 0 1at 233.714 kb on - strandat 233.724 kb on - strandat 233.728 kb on + strandat 233.730 kb on + strandat 233.730 kb on + strandat 233.730 kb on + strandat 233.730 kb on + strandat 233.730 kb on + strandat 233.730 kb on + strandat 233.730 kb on + strandat 233.730 kb on + strandat 233.738 kb on - strandat 233.738 kb on - strandat 233.738 kb on - strandat 233.738 kb on - strandat 233.753 kb on + strandat 233.774 kb on + strand, within CSW01_01210at 233.785 kb on + strand, within CSW01_01210at 233.785 kb on + strand, within CSW01_01210at 233.787 kb on - strand, within CSW01_01210at 233.793 kb on + strand, within CSW01_01210at 233.793 kb on + strand, within CSW01_01210at 233.793 kb on - strand, within CSW01_01210at 233.793 kb on - strand, within CSW01_01210at 233.793 kb on - strand, within CSW01_01210at 233.807 kb on + strand, within CSW01_01210at 233.819 kb on + strand, within CSW01_01210at 233.836 kb on + strand, within CSW01_01210at 233.873 kb on - strand, within CSW01_01210at 233.874 kb on - strand, within CSW01_01210at 233.884 kb on + strand, within CSW01_01210at 233.884 kb on + strand, within CSW01_01210at 233.884 kb on + strand, within CSW01_01210at 233.885 kb on - strand, within CSW01_01210at 233.885 kb on - strand, within CSW01_01210at 233.904 kb on + strand, within CSW01_01210at 233.904 kb on - strand, within CSW01_01210at 233.904 kb on - strand, within CSW01_01210at 233.910 kb on + strand, within CSW01_01210at 233.910 kb on + strand, within CSW01_01210at 233.911 kb on + strand, within CSW01_01210at 233.911 kb on + strand, within CSW01_01210at 233.918 kb on - strand, within CSW01_01210at 233.918 kb on - strand, within CSW01_01210at 233.918 kb on - strand, within CSW01_01210at 233.918 kb on - strand, within CSW01_01210at 233.918 kb on - strand, within CSW01_01210at 233.918 kb on - strand, within CSW01_01210at 233.954 kb on - strand, within CSW01_01210at 233.956 kb on + strand, within CSW01_01210at 233.964 kb on - strand, within CSW01_01210at 233.964 kb on - strand, within CSW01_01210at 233.964 kb on - strand, within CSW01_01210at 233.966 kb on + strand, within CSW01_01210at 233.986 kb on + strand, within CSW01_01210at 234.007 kb on + strand, within CSW01_01210at 234.011 kb on + strand, within CSW01_01210at 234.012 kb on - strand, within CSW01_01210at 234.019 kb on + strand, within CSW01_01210at 234.029 kb on + strand, within CSW01_01210at 234.029 kb on + strand, within CSW01_01210at 234.029 kb on + strand, within CSW01_01210at 234.042 kb on + strand, within CSW01_01210at 234.050 kb on - strand, within CSW01_01210at 234.050 kb on - strand, within CSW01_01210at 234.050 kb on - strand, within CSW01_01210at 234.050 kb on - strand, within CSW01_01210at 234.176 kb on + strand, within CSW01_01210at 234.208 kb on + strand, within CSW01_01210at 234.259 kb on + strand, within CSW01_01210at 234.282 kb on - strand, within CSW01_01210at 234.282 kb on - strand, within CSW01_01210at 234.320 kb on + strand, within CSW01_01210at 234.351 kb on + strand, within CSW01_01210at 234.353 kb on + strand, within CSW01_01210at 234.441 kb on - strand, within CSW01_01210at 234.446 kb on - strand, within CSW01_01210at 234.546 kb on + strandat 234.546 kb on + strandat 234.546 kb on + strandat 234.546 kb on + strandat 234.546 kb on + strandat 234.549 kb on - strandat 234.554 kb on - strandat 234.554 kb on - strandat 234.554 kb on - strandat 234.554 kb on - strandat 234.554 kb on - strandat 234.554 kb on - strandat 234.554 kb on - strandat 234.554 kb on - strandat 234.554 kb on - strandat 234.554 kb on - strandat 234.554 kb on - strandat 234.556 kb on + strandat 234.561 kb on + strandat 234.564 kb on - strandat 234.566 kb on - strandat 234.566 kb on - strandat 234.603 kb on + strandat 234.611 kb on - strandat 234.634 kb on + strandat 234.679 kb on - strand, within CSW01_01215at 234.729 kb on + strand, within CSW01_01215at 234.737 kb on - strand, within CSW01_01215at 234.737 kb on - strand, within CSW01_01215at 234.783 kb on - strand, within CSW01_01215at 234.800 kb on - strand, within CSW01_01215at 234.828 kb on + strand, within CSW01_01215at 234.828 kb on + strand, within CSW01_01215at 234.836 kb on - strand, within CSW01_01215at 234.836 kb on - strand, within CSW01_01215at 234.836 kb on - strand, within CSW01_01215at 234.900 kb on - strand, within CSW01_01215at 234.922 kb on - strand, within CSW01_01215at 234.922 kb on - strand, within CSW01_01215at 234.935 kb on - strand, within CSW01_01215at 234.937 kb on + strand, within CSW01_01215at 234.937 kb on + strand, within CSW01_01215at 234.937 kb on + strand, within CSW01_01215at 234.945 kb on - strand, within CSW01_01215at 234.945 kb on - strand, within CSW01_01215at 234.945 kb on - strand, within CSW01_01215at 234.956 kb on + strand, within CSW01_01215at 235.004 kb on + strand, within CSW01_01215at 235.010 kb on - strand, within CSW01_01215at 235.010 kb on - strand, within CSW01_01215at 235.010 kb on - strand, within CSW01_01215at 235.012 kb on - strand, within CSW01_01215at 235.021 kb on + strand, within CSW01_01215at 235.113 kb on + strand, within CSW01_01215at 235.169 kb on + strand, within CSW01_01215at 235.169 kb on + strand, within CSW01_01215at 235.177 kb on - strand, within CSW01_01215at 235.177 kb on - strand, within CSW01_01215at 235.177 kb on - strand, within CSW01_01215at 235.177 kb on - strand, within CSW01_01215at 235.186 kb on + strand, within CSW01_01215at 235.194 kb on - strand, within CSW01_01215at 235.234 kb on - strand, within CSW01_01215at 235.250 kb on + strand, within CSW01_01215at 235.256 kb on + strand, within CSW01_01215at 235.257 kb on - strand, within CSW01_01215at 235.275 kb on + strandat 235.275 kb on + strandat 235.282 kb on + strandat 235.283 kb on - strandat 235.285 kb on + strandat 235.293 kb on - strandat 235.352 kb on - strandat 235.484 kb on + strandat 235.489 kb on + strandat 235.490 kb on - strandat 235.537 kb on + strand, within CSW01_01220at 235.542 kb on + strand, within CSW01_01220at 235.578 kb on - strand, within CSW01_01220at 235.583 kb on + strand, within CSW01_01220at 235.591 kb on - strand, within CSW01_01220at 235.633 kb on + strand, within CSW01_01220at 235.697 kb on + strand, within CSW01_01220at 235.768 kb on + strand, within CSW01_01220at 235.787 kb on + strand, within CSW01_01220at 235.798 kb on + strand, within CSW01_01220at 235.866 kb on - strand, within CSW01_01220at 235.890 kb on - strand, within CSW01_01220at 235.892 kb on + strand, within CSW01_01220at 235.900 kb on - strand, within CSW01_01220at 235.946 kb on + strand, within CSW01_01220at 235.977 kb on + strand, within CSW01_01220at 235.985 kb on - strand, within CSW01_01220at 236.009 kb on - strand, within CSW01_01220at 236.011 kb on + strand, within CSW01_01220at 236.127 kb on - strand, within CSW01_01220at 236.128 kb on + strand, within CSW01_01220at 236.159 kb on + strand, within CSW01_01220at 236.248 kb on - strand, within CSW01_01220at 236.250 kb on + strand, within CSW01_01220at 236.308 kb on - strand, within CSW01_01220

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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233,714 - -0.1
233,724 - +0.2
233,728 + -0.2
233,730 + -0.5
233,730 + -0.6
233,730 + +0.9
233,730 + +0.5
233,730 + -0.4
233,730 + -1.1
233,730 + -0.4
233,730 + -0.1
233,738 - +0.4
233,738 - +0.2
233,738 - +1.3
233,738 - +0.4
233,753 + +0.8
233,774 + CSW01_01210 0.11 +0.1
233,785 + CSW01_01210 0.12 +0.4
233,785 + CSW01_01210 0.12 -0.1
233,787 - CSW01_01210 0.12 -0.7
233,793 + CSW01_01210 0.13 -0.6
233,793 + CSW01_01210 0.13 -0.2
233,793 - CSW01_01210 0.13 +0.4
233,793 - CSW01_01210 0.13 -1.1
233,793 - CSW01_01210 0.13 +0.3
233,807 + CSW01_01210 0.14 -0.2
233,819 + CSW01_01210 0.16 +0.2
233,836 + CSW01_01210 0.18 +0.8
233,873 - CSW01_01210 0.22 -1.3
233,874 - CSW01_01210 0.22 +0.1
233,884 + CSW01_01210 0.23 -0.8
233,884 + CSW01_01210 0.23 -0.1
233,884 + CSW01_01210 0.23 -0.0
233,885 - CSW01_01210 0.23 +0.1
233,885 - CSW01_01210 0.23 -0.9
233,904 + CSW01_01210 0.25 -1.2
233,904 - CSW01_01210 0.25 -0.2
233,904 - CSW01_01210 0.25 +0.5
233,910 + CSW01_01210 0.25 -0.2
233,910 + CSW01_01210 0.25 +0.2
233,911 + CSW01_01210 0.26 -0.1
233,911 + CSW01_01210 0.26 -0.1
233,918 - CSW01_01210 0.26 +0.5
233,918 - CSW01_01210 0.26 -0.3
233,918 - CSW01_01210 0.26 -0.0
233,918 - CSW01_01210 0.26 -0.1
233,918 - CSW01_01210 0.26 +0.0
233,918 - CSW01_01210 0.26 +0.1
233,954 - CSW01_01210 0.30 -1.1
233,956 + CSW01_01210 0.30 +0.7
233,964 - CSW01_01210 0.31 -0.3
233,964 - CSW01_01210 0.31 +0.4
233,964 - CSW01_01210 0.31 -0.8
233,966 + CSW01_01210 0.32 -0.3
233,986 + CSW01_01210 0.34 +0.6
234,007 + CSW01_01210 0.36 +1.0
234,011 + CSW01_01210 0.36 -0.5
234,012 - CSW01_01210 0.36 +0.8
234,019 + CSW01_01210 0.37 +0.6
234,029 + CSW01_01210 0.38 +0.6
234,029 + CSW01_01210 0.38 -0.2
234,029 + CSW01_01210 0.38 -0.4
234,042 + CSW01_01210 0.40 -1.3
234,050 - CSW01_01210 0.41 -0.0
234,050 - CSW01_01210 0.41 -0.7
234,050 - CSW01_01210 0.41 -0.8
234,050 - CSW01_01210 0.41 -0.2
234,176 + CSW01_01210 0.54 -0.4
234,208 + CSW01_01210 0.58 -0.0
234,259 + CSW01_01210 0.63 -0.4
234,282 - CSW01_01210 0.65 +0.8
234,282 - CSW01_01210 0.65 -0.1
234,320 + CSW01_01210 0.70 +0.7
234,351 + CSW01_01210 0.73 -0.6
234,353 + CSW01_01210 0.73 -0.3
234,441 - CSW01_01210 0.83 -0.1
234,446 - CSW01_01210 0.83 +0.8
234,546 + +0.3
234,546 + -0.0
234,546 + -0.8
234,546 + +0.4
234,546 + +1.0
234,549 - +0.5
234,554 - +0.3
234,554 - -0.4
234,554 - +0.8
234,554 - +0.2
234,554 - -0.3
234,554 - +0.5
234,554 - -0.9
234,554 - +0.1
234,554 - -0.4
234,554 - -0.4
234,554 - -0.3
234,556 + -0.6
234,561 + -0.3
234,564 - -0.4
234,566 - +0.6
234,566 - -0.1
234,603 + -0.5
234,611 - +0.0
234,634 + -0.2
234,679 - CSW01_01215 0.11 -0.5
234,729 + CSW01_01215 0.17 -0.8
234,737 - CSW01_01215 0.19 +0.6
234,737 - CSW01_01215 0.19 +0.1
234,783 - CSW01_01215 0.25 -1.3
234,800 - CSW01_01215 0.27 -0.2
234,828 + CSW01_01215 0.31 -0.4
234,828 + CSW01_01215 0.31 +0.4
234,836 - CSW01_01215 0.32 -0.5
234,836 - CSW01_01215 0.32 -0.6
234,836 - CSW01_01215 0.32 -0.1
234,900 - CSW01_01215 0.40 -0.4
234,922 - CSW01_01215 0.43 +0.1
234,922 - CSW01_01215 0.43 +0.1
234,935 - CSW01_01215 0.45 +0.4
234,937 + CSW01_01215 0.45 -0.2
234,937 + CSW01_01215 0.45 -0.2
234,937 + CSW01_01215 0.45 -0.2
234,945 - CSW01_01215 0.47 -0.6
234,945 - CSW01_01215 0.47 -0.5
234,945 - CSW01_01215 0.47 -0.6
234,956 + CSW01_01215 0.48 +0.3
235,004 + CSW01_01215 0.54 +0.6
235,010 - CSW01_01215 0.55 +0.5
235,010 - CSW01_01215 0.55 -0.7
235,010 - CSW01_01215 0.55 -2.7
235,012 - CSW01_01215 0.56 -0.5
235,021 + CSW01_01215 0.57 -0.3
235,113 + CSW01_01215 0.69 +0.3
235,169 + CSW01_01215 0.77 +0.0
235,169 + CSW01_01215 0.77 -1.6
235,177 - CSW01_01215 0.78 +0.2
235,177 - CSW01_01215 0.78 -1.1
235,177 - CSW01_01215 0.78 +0.3
235,177 - CSW01_01215 0.78 +0.5
235,186 + CSW01_01215 0.79 -1.4
235,194 - CSW01_01215 0.80 -1.8
235,234 - CSW01_01215 0.85 +1.4
235,250 + CSW01_01215 0.88 -0.4
235,256 + CSW01_01215 0.88 +0.5
235,257 - CSW01_01215 0.88 -0.7
235,275 + +0.4
235,275 + -2.1
235,282 + -0.1
235,283 - -0.1
235,285 + -0.6
235,293 - +0.2
235,352 - +0.2
235,484 + +1.1
235,489 + -0.8
235,490 - -0.9
235,537 + CSW01_01220 0.12 -0.7
235,542 + CSW01_01220 0.13 +0.5
235,578 - CSW01_01220 0.15 +0.3
235,583 + CSW01_01220 0.15 +0.7
235,591 - CSW01_01220 0.16 -0.4
235,633 + CSW01_01220 0.19 +1.1
235,697 + CSW01_01220 0.23 -0.2
235,768 + CSW01_01220 0.27 -0.9
235,787 + CSW01_01220 0.28 +0.2
235,798 + CSW01_01220 0.29 -2.0
235,866 - CSW01_01220 0.33 -0.3
235,890 - CSW01_01220 0.35 +0.0
235,892 + CSW01_01220 0.35 +0.1
235,900 - CSW01_01220 0.35 -0.9
235,946 + CSW01_01220 0.38 -0.5
235,977 + CSW01_01220 0.40 -1.5
235,985 - CSW01_01220 0.41 +0.7
236,009 - CSW01_01220 0.42 +0.4
236,011 + CSW01_01220 0.42 +0.5
236,127 - CSW01_01220 0.50 -0.1
236,128 + CSW01_01220 0.50 +0.7
236,159 + CSW01_01220 0.52 -0.4
236,248 - CSW01_01220 0.57 -0.0
236,250 + CSW01_01220 0.58 +0.6
236,308 - CSW01_01220 0.61 +0.4

Or see this region's nucleotide sequence