Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01160

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01155 and CSW01_01160 are separated by 294 nucleotidesCSW01_01160 and CSW01_01165 are separated by 13 nucleotidesCSW01_01165 and CSW01_01170 are separated by 220 nucleotidesCSW01_01170 and CSW01_01175 are separated by 9 nucleotides CSW01_01155: CSW01_01155 - DNA repair protein RadC, at 225,261 to 225,935 _01155 CSW01_01160: CSW01_01160 - 50S ribosomal protein L28, at 226,230 to 226,466 _01160 CSW01_01165: CSW01_01165 - 50S ribosomal protein L33, at 226,480 to 226,647 _01165 CSW01_01170: CSW01_01170 - hypothetical protein, at 226,868 to 227,356 _01170 CSW01_01175: CSW01_01175 - formamidopyrimidine-DNA glycosylase, at 227,366 to 228,175 _01175 Position (kb) 226 227Strain fitness (log2 ratio) -2 -1 0 1 2at 225.258 kb on + strandat 225.265 kb on + strandat 225.334 kb on - strand, within CSW01_01155at 225.337 kb on + strand, within CSW01_01155at 225.373 kb on + strand, within CSW01_01155at 225.379 kb on + strand, within CSW01_01155at 225.392 kb on + strand, within CSW01_01155at 225.395 kb on - strand, within CSW01_01155at 225.400 kb on - strand, within CSW01_01155at 225.440 kb on + strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.448 kb on - strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.477 kb on + strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.513 kb on + strand, within CSW01_01155at 225.513 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.538 kb on - strand, within CSW01_01155at 225.555 kb on - strand, within CSW01_01155at 225.559 kb on + strand, within CSW01_01155at 225.559 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.567 kb on - strand, within CSW01_01155at 225.567 kb on - strand, within CSW01_01155at 225.569 kb on + strand, within CSW01_01155at 225.569 kb on + strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.574 kb on + strand, within CSW01_01155at 225.632 kb on + strand, within CSW01_01155at 225.720 kb on - strand, within CSW01_01155at 225.749 kb on + strand, within CSW01_01155at 225.749 kb on + strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.806 kb on + strand, within CSW01_01155at 225.816 kb on + strand, within CSW01_01155at 225.821 kb on + strand, within CSW01_01155at 225.829 kb on + strand, within CSW01_01155at 225.829 kb on + strand, within CSW01_01155at 225.853 kb on + strand, within CSW01_01155at 225.859 kb on - strand, within CSW01_01155at 225.910 kb on + strandat 225.934 kb on + strandat 225.934 kb on + strandat 225.942 kb on - strandat 225.948 kb on - strandat 226.536 kb on + strand, within CSW01_01165at 226.745 kb on + strandat 226.745 kb on + strandat 226.752 kb on + strandat 226.752 kb on + strandat 226.752 kb on + strandat 226.753 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.857 kb on - strandat 226.900 kb on + strandat 227.014 kb on + strand, within CSW01_01170at 227.022 kb on - strand, within CSW01_01170at 227.039 kb on - strand, within CSW01_01170at 227.052 kb on - strand, within CSW01_01170at 227.081 kb on + strand, within CSW01_01170at 227.129 kb on - strand, within CSW01_01170at 227.136 kb on + strand, within CSW01_01170at 227.144 kb on - strand, within CSW01_01170at 227.159 kb on - strand, within CSW01_01170at 227.169 kb on - strand, within CSW01_01170at 227.258 kb on - strand, within CSW01_01170at 227.264 kb on - strand, within CSW01_01170at 227.341 kb on - strandat 227.397 kb on + strandat 227.417 kb on - strandat 227.432 kb on + strandat 227.432 kb on + strandat 227.440 kb on - strandat 227.452 kb on - strand, within CSW01_01175at 227.459 kb on + strand, within CSW01_01175

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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225,258 + -0.5
225,265 + -0.1
225,334 - CSW01_01155 0.11 +0.5
225,337 + CSW01_01155 0.11 -0.3
225,373 + CSW01_01155 0.17 +1.4
225,379 + CSW01_01155 0.17 -0.1
225,392 + CSW01_01155 0.19 -0.4
225,395 - CSW01_01155 0.20 +0.2
225,400 - CSW01_01155 0.21 +0.7
225,440 + CSW01_01155 0.27 +0.5
225,448 - CSW01_01155 0.28 +1.5
225,448 - CSW01_01155 0.28 -0.1
225,448 - CSW01_01155 0.28 +0.1
225,448 - CSW01_01155 0.28 +0.3
225,477 + CSW01_01155 0.32 +0.1
225,477 + CSW01_01155 0.32 -0.4
225,477 + CSW01_01155 0.32 +0.1
225,477 + CSW01_01155 0.32 +0.4
225,485 - CSW01_01155 0.33 +0.2
225,485 - CSW01_01155 0.33 +0.3
225,485 - CSW01_01155 0.33 -0.3
225,485 - CSW01_01155 0.33 -0.5
225,513 + CSW01_01155 0.37 +0.7
225,513 + CSW01_01155 0.37 +0.1
225,530 + CSW01_01155 0.40 -0.3
225,530 + CSW01_01155 0.40 -0.6
225,530 + CSW01_01155 0.40 -0.6
225,538 - CSW01_01155 0.41 -0.2
225,555 - CSW01_01155 0.44 +0.7
225,559 + CSW01_01155 0.44 -0.1
225,559 + CSW01_01155 0.44 +0.8
225,564 + CSW01_01155 0.45 +0.6
225,564 + CSW01_01155 0.45 -0.1
225,564 + CSW01_01155 0.45 -0.1
225,564 + CSW01_01155 0.45 +2.1
225,564 + CSW01_01155 0.45 +0.2
225,564 + CSW01_01155 0.45 +0.2
225,567 - CSW01_01155 0.45 +0.5
225,567 - CSW01_01155 0.45 -0.0
225,569 + CSW01_01155 0.46 +0.6
225,569 + CSW01_01155 0.46 +0.8
225,572 - CSW01_01155 0.46 +2.5
225,572 - CSW01_01155 0.46 +0.7
225,572 - CSW01_01155 0.46 +0.4
225,572 - CSW01_01155 0.46 -0.7
225,574 + CSW01_01155 0.46 +0.1
225,632 + CSW01_01155 0.55 +0.4
225,720 - CSW01_01155 0.68 +0.0
225,749 + CSW01_01155 0.72 +2.0
225,749 + CSW01_01155 0.72 +0.1
225,757 - CSW01_01155 0.73 -1.1
225,757 - CSW01_01155 0.73 +0.3
225,757 - CSW01_01155 0.73 +0.2
225,757 - CSW01_01155 0.73 -0.3
225,806 + CSW01_01155 0.81 +0.3
225,816 + CSW01_01155 0.82 -0.2
225,821 + CSW01_01155 0.83 +0.2
225,829 + CSW01_01155 0.84 -0.5
225,829 + CSW01_01155 0.84 -0.8
225,853 + CSW01_01155 0.88 -0.3
225,859 - CSW01_01155 0.89 +0.2
225,910 + +0.2
225,934 + -0.2
225,934 + +0.5
225,942 - -0.4
225,948 - +0.1
226,536 + CSW01_01165 0.33 -2.1
226,745 + -1.1
226,745 + -0.2
226,752 + -1.6
226,752 + +0.5
226,752 + +1.0
226,753 - +0.7
226,760 - -0.1
226,760 - +0.4
226,760 - +0.1
226,760 - -0.2
226,760 - +1.0
226,857 - -0.1
226,900 + +0.4
227,014 + CSW01_01170 0.30 +0.4
227,022 - CSW01_01170 0.31 +0.4
227,039 - CSW01_01170 0.35 -0.4
227,052 - CSW01_01170 0.38 +1.0
227,081 + CSW01_01170 0.44 +0.2
227,129 - CSW01_01170 0.53 +0.6
227,136 + CSW01_01170 0.55 +0.8
227,144 - CSW01_01170 0.56 -0.0
227,159 - CSW01_01170 0.60 +0.5
227,169 - CSW01_01170 0.62 +0.2
227,258 - CSW01_01170 0.80 -0.2
227,264 - CSW01_01170 0.81 +0.1
227,341 - -0.9
227,397 + -0.4
227,417 - +0.1
227,432 + +1.0
227,432 + +0.2
227,440 - +0.5
227,452 - CSW01_01175 0.11 +1.7
227,459 + CSW01_01175 0.11 +0.3

Or see this region's nucleotide sequence