Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01110

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01100 and CSW01_01105 are separated by 106 nucleotidesCSW01_01105 and CSW01_01110 are separated by 65 nucleotidesCSW01_01110 and CSW01_01115 are separated by 163 nucleotides CSW01_01100: CSW01_01100 - PTS N-acetylmuramic acid EIIBC component, at 214,453 to 215,898 _01100 CSW01_01105: CSW01_01105 - hypothetical protein, at 216,005 to 216,493 _01105 CSW01_01110: CSW01_01110 - YicC family protein, at 216,559 to 217,425 _01110 CSW01_01115: CSW01_01115 - ribonuclease PH, at 217,589 to 218,305 _01115 Position (kb) 216 217 218Strain fitness (log2 ratio) -2 -1 0 1 2at 215.619 kb on + strand, within CSW01_01100at 215.740 kb on + strand, within CSW01_01100at 215.740 kb on + strand, within CSW01_01100at 215.758 kb on - strandat 215.778 kb on - strandat 215.837 kb on + strandat 215.845 kb on - strandat 215.851 kb on - strandat 215.860 kb on + strandat 215.892 kb on + strandat 215.907 kb on + strandat 215.920 kb on - strandat 215.936 kb on - strandat 215.954 kb on + strandat 216.017 kb on + strandat 216.104 kb on - strand, within CSW01_01105at 216.124 kb on - strand, within CSW01_01105at 216.203 kb on - strand, within CSW01_01105at 216.203 kb on - strand, within CSW01_01105at 216.213 kb on + strand, within CSW01_01105at 216.283 kb on + strand, within CSW01_01105at 216.291 kb on - strand, within CSW01_01105at 216.320 kb on + strand, within CSW01_01105at 216.362 kb on + strand, within CSW01_01105at 216.421 kb on + strand, within CSW01_01105at 216.421 kb on + strand, within CSW01_01105at 216.429 kb on - strand, within CSW01_01105at 216.429 kb on - strand, within CSW01_01105at 216.445 kb on + strandat 216.445 kb on + strandat 216.513 kb on + strandat 216.549 kb on + strandat 216.550 kb on + strandat 216.594 kb on - strandat 216.636 kb on - strandat 216.671 kb on + strand, within CSW01_01110at 216.679 kb on - strand, within CSW01_01110at 216.681 kb on - strand, within CSW01_01110at 216.766 kb on + strand, within CSW01_01110at 216.774 kb on - strand, within CSW01_01110at 216.813 kb on - strand, within CSW01_01110at 216.819 kb on - strand, within CSW01_01110at 216.845 kb on - strand, within CSW01_01110at 216.962 kb on + strand, within CSW01_01110at 216.977 kb on + strand, within CSW01_01110at 216.977 kb on + strand, within CSW01_01110at 217.025 kb on + strand, within CSW01_01110at 217.030 kb on + strand, within CSW01_01110at 217.038 kb on - strand, within CSW01_01110at 217.038 kb on - strand, within CSW01_01110at 217.059 kb on - strand, within CSW01_01110at 217.060 kb on - strand, within CSW01_01110at 217.114 kb on - strand, within CSW01_01110at 217.120 kb on + strand, within CSW01_01110at 217.125 kb on - strand, within CSW01_01110at 217.129 kb on + strand, within CSW01_01110at 217.276 kb on + strand, within CSW01_01110at 217.287 kb on + strand, within CSW01_01110at 217.295 kb on + strand, within CSW01_01110at 217.295 kb on - strand, within CSW01_01110at 217.295 kb on - strand, within CSW01_01110at 217.303 kb on - strand, within CSW01_01110at 217.305 kb on + strand, within CSW01_01110at 217.313 kb on - strand, within CSW01_01110at 217.367 kb on + strandat 217.375 kb on - strandat 217.380 kb on - strandat 217.382 kb on + strandat 217.390 kb on - strandat 217.409 kb on + strandat 217.417 kb on - strandat 217.457 kb on - strandat 217.489 kb on + strandat 217.529 kb on + strandat 217.550 kb on - strandat 217.565 kb on - strandat 217.566 kb on + strandat 217.577 kb on + strandat 217.578 kb on + strandat 217.608 kb on + strandat 217.613 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.650 kb on - strandat 217.650 kb on - strandat 217.650 kb on - strandat 217.650 kb on - strandat 217.650 kb on - strandat 217.650 kb on - strandat 217.664 kb on + strand, within CSW01_01115at 217.665 kb on + strand, within CSW01_01115at 217.672 kb on - strand, within CSW01_01115at 217.672 kb on - strand, within CSW01_01115at 217.672 kb on - strand, within CSW01_01115at 217.705 kb on - strand, within CSW01_01115at 217.705 kb on - strand, within CSW01_01115at 217.713 kb on + strand, within CSW01_01115at 217.735 kb on - strand, within CSW01_01115at 217.745 kb on + strand, within CSW01_01115at 217.745 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.753 kb on - strand, within CSW01_01115at 217.757 kb on + strand, within CSW01_01115at 217.759 kb on - strand, within CSW01_01115at 217.759 kb on - strand, within CSW01_01115at 217.805 kb on + strand, within CSW01_01115at 217.825 kb on - strand, within CSW01_01115at 217.827 kb on + strand, within CSW01_01115at 217.878 kb on + strand, within CSW01_01115at 217.886 kb on - strand, within CSW01_01115at 217.916 kb on + strand, within CSW01_01115at 217.940 kb on - strand, within CSW01_01115at 217.989 kb on + strand, within CSW01_01115at 218.072 kb on + strand, within CSW01_01115at 218.096 kb on + strand, within CSW01_01115at 218.196 kb on + strand, within CSW01_01115at 218.198 kb on + strand, within CSW01_01115at 218.206 kb on - strand, within CSW01_01115at 218.217 kb on + strand, within CSW01_01115at 218.217 kb on + strand, within CSW01_01115at 218.225 kb on - strand, within CSW01_01115at 218.225 kb on - strand, within CSW01_01115at 218.225 kb on - strand, within CSW01_01115at 218.279 kb on + strandat 218.279 kb on + strandat 218.287 kb on - strandat 218.287 kb on - strandat 218.287 kb on - strandat 218.328 kb on - strandat 218.386 kb on + strandat 218.397 kb on + strandat 218.412 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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215,619 + CSW01_01100 0.81 -0.7
215,740 + CSW01_01100 0.89 +0.4
215,740 + CSW01_01100 0.89 +1.1
215,758 - -0.9
215,778 - +0.5
215,837 + -0.6
215,845 - +0.1
215,851 - +1.0
215,860 + -0.5
215,892 + -0.0
215,907 + -0.4
215,920 - +0.2
215,936 - +1.7
215,954 + +0.3
216,017 + -0.2
216,104 - CSW01_01105 0.20 +0.7
216,124 - CSW01_01105 0.24 +0.5
216,203 - CSW01_01105 0.40 -0.6
216,203 - CSW01_01105 0.40 -0.1
216,213 + CSW01_01105 0.43 +0.0
216,283 + CSW01_01105 0.57 -0.1
216,291 - CSW01_01105 0.58 -0.4
216,320 + CSW01_01105 0.64 +0.0
216,362 + CSW01_01105 0.73 -0.3
216,421 + CSW01_01105 0.85 -0.6
216,421 + CSW01_01105 0.85 +0.5
216,429 - CSW01_01105 0.87 +0.5
216,429 - CSW01_01105 0.87 +0.4
216,445 + +0.1
216,445 + +0.1
216,513 + +1.2
216,549 + +0.2
216,550 + -0.3
216,594 - -0.4
216,636 - -0.7
216,671 + CSW01_01110 0.13 -1.3
216,679 - CSW01_01110 0.14 -0.4
216,681 - CSW01_01110 0.14 -0.6
216,766 + CSW01_01110 0.24 -0.6
216,774 - CSW01_01110 0.25 -0.8
216,813 - CSW01_01110 0.29 +0.1
216,819 - CSW01_01110 0.30 -1.6
216,845 - CSW01_01110 0.33 -0.2
216,962 + CSW01_01110 0.46 -0.7
216,977 + CSW01_01110 0.48 -0.4
216,977 + CSW01_01110 0.48 -0.1
217,025 + CSW01_01110 0.54 -0.7
217,030 + CSW01_01110 0.54 -0.1
217,038 - CSW01_01110 0.55 -0.1
217,038 - CSW01_01110 0.55 -1.2
217,059 - CSW01_01110 0.58 -0.4
217,060 - CSW01_01110 0.58 +0.5
217,114 - CSW01_01110 0.64 -0.5
217,120 + CSW01_01110 0.65 +1.1
217,125 - CSW01_01110 0.65 -0.3
217,129 + CSW01_01110 0.66 -1.5
217,276 + CSW01_01110 0.83 -0.0
217,287 + CSW01_01110 0.84 -2.1
217,295 + CSW01_01110 0.85 -0.5
217,295 - CSW01_01110 0.85 -0.1
217,295 - CSW01_01110 0.85 -0.2
217,303 - CSW01_01110 0.86 +0.0
217,305 + CSW01_01110 0.86 -0.1
217,313 - CSW01_01110 0.87 +0.0
217,367 + -2.3
217,375 - +0.4
217,380 - -0.0
217,382 + +0.5
217,390 - -0.8
217,409 + +1.7
217,417 - -1.0
217,457 - +0.0
217,489 + +0.4
217,529 + -0.4
217,550 - -0.4
217,565 - +1.1
217,566 + +0.4
217,577 + -0.4
217,578 + -0.6
217,608 + +1.6
217,613 + -1.2
217,642 + -0.5
217,642 + -0.4
217,642 + -0.2
217,642 + -0.8
217,642 + -0.3
217,642 + +0.6
217,642 + +0.6
217,642 + -1.1
217,642 + +0.1
217,650 - -0.1
217,650 - -0.3
217,650 - -1.1
217,650 - +0.7
217,650 - +1.0
217,650 - +1.4
217,664 + CSW01_01115 0.10 -0.0
217,665 + CSW01_01115 0.11 -1.3
217,672 - CSW01_01115 0.12 +2.0
217,672 - CSW01_01115 0.12 -1.0
217,672 - CSW01_01115 0.12 -0.3
217,705 - CSW01_01115 0.16 +1.2
217,705 - CSW01_01115 0.16 -0.4
217,713 + CSW01_01115 0.17 -0.7
217,735 - CSW01_01115 0.20 -0.6
217,745 + CSW01_01115 0.22 -0.5
217,745 + CSW01_01115 0.22 -0.2
217,751 + CSW01_01115 0.23 -0.3
217,751 + CSW01_01115 0.23 -0.0
217,751 + CSW01_01115 0.23 -1.2
217,751 + CSW01_01115 0.23 +0.7
217,753 - CSW01_01115 0.23 +0.7
217,757 + CSW01_01115 0.23 -0.5
217,759 - CSW01_01115 0.24 +0.4
217,759 - CSW01_01115 0.24 -0.8
217,805 + CSW01_01115 0.30 +0.0
217,825 - CSW01_01115 0.33 +0.2
217,827 + CSW01_01115 0.33 +0.7
217,878 + CSW01_01115 0.40 -0.1
217,886 - CSW01_01115 0.41 +0.4
217,916 + CSW01_01115 0.46 -0.3
217,940 - CSW01_01115 0.49 -0.4
217,989 + CSW01_01115 0.56 +0.7
218,072 + CSW01_01115 0.67 -0.5
218,096 + CSW01_01115 0.71 -0.3
218,196 + CSW01_01115 0.85 -0.4
218,198 + CSW01_01115 0.85 +0.2
218,206 - CSW01_01115 0.86 -0.7
218,217 + CSW01_01115 0.88 -0.7
218,217 + CSW01_01115 0.88 +0.2
218,225 - CSW01_01115 0.89 +0.1
218,225 - CSW01_01115 0.89 -2.3
218,225 - CSW01_01115 0.89 +1.6
218,279 + +0.1
218,279 + +0.4
218,287 - +0.5
218,287 - +0.0
218,287 - +0.1
218,328 - +0.4
218,386 + -0.2
218,397 + -0.1
218,412 + +0.0

Or see this region's nucleotide sequence