Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00960

Experiment: LB_Aerobic_18HR_ZN18A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00950 and CSW01_00955 are separated by 416 nucleotidesCSW01_00955 and CSW01_00960 are separated by 248 nucleotidesCSW01_00960 and CSW01_00965 are separated by 13 nucleotides CSW01_00950: CSW01_00950 - transcriptional regulator, at 177,862 to 178,425 _00950 CSW01_00955: CSW01_00955 - hypothetical protein, at 178,842 to 179,090 _00955 CSW01_00960: CSW01_00960 - patatin, at 179,339 to 180,406 _00960 CSW01_00965: CSW01_00965 - cyclic AMP-GMP synthase, at 180,420 to 181,730 _00965 Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 178.356 kb on + strand, within CSW01_00950at 178.389 kb on + strandat 178.523 kb on + strandat 178.530 kb on + strandat 178.538 kb on + strandat 178.546 kb on - strandat 178.565 kb on + strandat 178.565 kb on + strandat 178.644 kb on - strandat 178.715 kb on + strandat 178.725 kb on + strandat 178.745 kb on + strandat 178.784 kb on - strandat 178.784 kb on - strandat 178.870 kb on - strand, within CSW01_00955at 178.870 kb on - strand, within CSW01_00955at 178.878 kb on + strand, within CSW01_00955at 178.899 kb on - strand, within CSW01_00955at 178.966 kb on + strand, within CSW01_00955at 178.966 kb on + strand, within CSW01_00955at 178.974 kb on - strand, within CSW01_00955at 179.011 kb on - strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.055 kb on + strand, within CSW01_00955at 179.055 kb on + strand, within CSW01_00955at 179.097 kb on + strandat 179.097 kb on + strandat 179.148 kb on - strandat 179.201 kb on + strandat 179.229 kb on + strandat 179.229 kb on + strandat 179.229 kb on + strandat 179.230 kb on + strandat 179.230 kb on + strandat 179.237 kb on - strandat 179.237 kb on - strandat 179.237 kb on - strandat 179.237 kb on - strandat 179.241 kb on + strandat 179.250 kb on - strandat 179.251 kb on + strandat 179.251 kb on + strandat 179.251 kb on + strandat 179.251 kb on + strandat 179.270 kb on - strandat 179.312 kb on - strandat 179.314 kb on - strandat 179.355 kb on + strandat 179.358 kb on + strandat 179.422 kb on - strandat 179.499 kb on + strand, within CSW01_00960at 179.499 kb on + strand, within CSW01_00960at 179.517 kb on - strand, within CSW01_00960at 179.545 kb on + strand, within CSW01_00960at 179.546 kb on + strand, within CSW01_00960at 179.555 kb on + strand, within CSW01_00960at 179.563 kb on - strand, within CSW01_00960at 179.668 kb on + strand, within CSW01_00960at 179.668 kb on + strand, within CSW01_00960at 179.668 kb on + strand, within CSW01_00960at 179.668 kb on + strand, within CSW01_00960at 179.676 kb on - strand, within CSW01_00960at 179.681 kb on + strand, within CSW01_00960at 179.709 kb on - strand, within CSW01_00960at 179.739 kb on + strand, within CSW01_00960at 179.747 kb on + strand, within CSW01_00960at 179.747 kb on + strand, within CSW01_00960at 179.792 kb on + strand, within CSW01_00960at 179.796 kb on + strand, within CSW01_00960at 179.838 kb on + strand, within CSW01_00960at 179.903 kb on + strand, within CSW01_00960at 179.903 kb on + strand, within CSW01_00960at 179.911 kb on - strand, within CSW01_00960at 179.924 kb on + strand, within CSW01_00960at 179.995 kb on - strand, within CSW01_00960at 179.995 kb on - strand, within CSW01_00960at 180.025 kb on + strand, within CSW01_00960at 180.033 kb on - strand, within CSW01_00960at 180.033 kb on - strand, within CSW01_00960at 180.049 kb on + strand, within CSW01_00960at 180.070 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.078 kb on - strand, within CSW01_00960at 180.078 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.084 kb on - strand, within CSW01_00960at 180.131 kb on + strand, within CSW01_00960at 180.131 kb on + strand, within CSW01_00960at 180.131 kb on + strand, within CSW01_00960at 180.138 kb on + strand, within CSW01_00960at 180.138 kb on + strand, within CSW01_00960at 180.139 kb on - strand, within CSW01_00960at 180.139 kb on - strand, within CSW01_00960at 180.146 kb on - strand, within CSW01_00960at 180.146 kb on - strand, within CSW01_00960at 180.175 kb on + strand, within CSW01_00960at 180.183 kb on - strand, within CSW01_00960at 180.183 kb on - strand, within CSW01_00960at 180.244 kb on + strand, within CSW01_00960at 180.252 kb on - strand, within CSW01_00960at 180.252 kb on - strand, within CSW01_00960at 180.275 kb on + strand, within CSW01_00960at 180.344 kb on - strandat 180.408 kb on + strandat 180.416 kb on - strandat 180.444 kb on - strandat 180.446 kb on + strandat 180.446 kb on + strandat 180.446 kb on + strandat 180.454 kb on - strandat 180.454 kb on - strandat 180.454 kb on - strandat 180.454 kb on - strandat 180.454 kb on - strandat 180.489 kb on - strandat 180.503 kb on - strandat 180.506 kb on + strandat 180.519 kb on + strandat 180.532 kb on - strandat 180.559 kb on - strand, within CSW01_00965at 180.566 kb on + strand, within CSW01_00965at 180.566 kb on + strand, within CSW01_00965at 180.567 kb on + strand, within CSW01_00965at 180.567 kb on + strand, within CSW01_00965at 180.574 kb on - strand, within CSW01_00965at 180.578 kb on + strand, within CSW01_00965at 180.653 kb on - strand, within CSW01_00965at 180.687 kb on - strand, within CSW01_00965at 180.713 kb on - strand, within CSW01_00965at 180.720 kb on - strand, within CSW01_00965at 180.751 kb on - strand, within CSW01_00965at 180.775 kb on - strand, within CSW01_00965at 180.777 kb on - strand, within CSW01_00965at 180.857 kb on + strand, within CSW01_00965at 180.948 kb on + strand, within CSW01_00965at 180.956 kb on - strand, within CSW01_00965at 180.956 kb on - strand, within CSW01_00965at 180.965 kb on + strand, within CSW01_00965at 180.973 kb on - strand, within CSW01_00965at 181.007 kb on - strand, within CSW01_00965at 181.151 kb on + strand, within CSW01_00965at 181.166 kb on + strand, within CSW01_00965at 181.176 kb on + strand, within CSW01_00965at 181.209 kb on + strand, within CSW01_00965at 181.239 kb on - strand, within CSW01_00965at 181.239 kb on - strand, within CSW01_00965at 181.271 kb on - strand, within CSW01_00965at 181.288 kb on + strand, within CSW01_00965at 181.304 kb on + strand, within CSW01_00965at 181.306 kb on - strand, within CSW01_00965at 181.327 kb on + strand, within CSW01_00965at 181.330 kb on - strand, within CSW01_00965

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A
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178,356 + CSW01_00950 0.88 +0.5
178,389 + +0.3
178,523 + -0.3
178,530 + +0.6
178,538 + +0.4
178,546 - -0.2
178,565 + -1.0
178,565 + +0.6
178,644 - +0.6
178,715 + +1.1
178,725 + -0.2
178,745 + +0.9
178,784 - +0.0
178,784 - -0.9
178,870 - CSW01_00955 0.11 -0.3
178,870 - CSW01_00955 0.11 +0.9
178,878 + CSW01_00955 0.14 -0.1
178,899 - CSW01_00955 0.23 -0.1
178,966 + CSW01_00955 0.50 -0.3
178,966 + CSW01_00955 0.50 -0.5
178,974 - CSW01_00955 0.53 -0.5
179,011 - CSW01_00955 0.68 +0.0
179,020 + CSW01_00955 0.71 +0.0
179,020 + CSW01_00955 0.71 +0.0
179,020 + CSW01_00955 0.71 +0.0
179,020 + CSW01_00955 0.71 +0.1
179,020 + CSW01_00955 0.71 -0.4
179,028 - CSW01_00955 0.75 +1.0
179,028 - CSW01_00955 0.75 -1.8
179,028 - CSW01_00955 0.75 -0.2
179,028 - CSW01_00955 0.75 +0.4
179,028 - CSW01_00955 0.75 -0.6
179,055 + CSW01_00955 0.86 -0.0
179,055 + CSW01_00955 0.86 -0.1
179,097 + -1.5
179,097 + +0.3
179,148 - -1.2
179,201 + -0.4
179,229 + +0.1
179,229 + -0.3
179,229 + -0.6
179,230 + -1.3
179,230 + -0.3
179,237 - -0.6
179,237 - -0.3
179,237 - -0.9
179,237 - -0.6
179,241 + -0.2
179,250 - -0.0
179,251 + -0.6
179,251 + -0.2
179,251 + -0.0
179,251 + +0.7
179,270 - -2.7
179,312 - +0.6
179,314 - -0.6
179,355 + +0.2
179,358 + -0.2
179,422 - +0.4
179,499 + CSW01_00960 0.15 -0.3
179,499 + CSW01_00960 0.15 -0.5
179,517 - CSW01_00960 0.17 -0.4
179,545 + CSW01_00960 0.19 +0.2
179,546 + CSW01_00960 0.19 -0.0
179,555 + CSW01_00960 0.20 +0.4
179,563 - CSW01_00960 0.21 +0.2
179,668 + CSW01_00960 0.31 -1.1
179,668 + CSW01_00960 0.31 -0.4
179,668 + CSW01_00960 0.31 +0.5
179,668 + CSW01_00960 0.31 -0.7
179,676 - CSW01_00960 0.32 -0.0
179,681 + CSW01_00960 0.32 -0.2
179,709 - CSW01_00960 0.35 -1.0
179,739 + CSW01_00960 0.37 -0.4
179,747 + CSW01_00960 0.38 +0.1
179,747 + CSW01_00960 0.38 +0.7
179,792 + CSW01_00960 0.42 +0.2
179,796 + CSW01_00960 0.43 -0.4
179,838 + CSW01_00960 0.47 +0.3
179,903 + CSW01_00960 0.53 +0.0
179,903 + CSW01_00960 0.53 +0.1
179,911 - CSW01_00960 0.54 -0.7
179,924 + CSW01_00960 0.55 +1.0
179,995 - CSW01_00960 0.61 +0.0
179,995 - CSW01_00960 0.61 -0.3
180,025 + CSW01_00960 0.64 +0.3
180,033 - CSW01_00960 0.65 +0.4
180,033 - CSW01_00960 0.65 +0.5
180,049 + CSW01_00960 0.66 +0.5
180,070 + CSW01_00960 0.68 -0.8
180,075 + CSW01_00960 0.69 +0.2
180,075 + CSW01_00960 0.69 -1.2
180,075 + CSW01_00960 0.69 +0.4
180,075 + CSW01_00960 0.69 +0.7
180,075 + CSW01_00960 0.69 -0.3
180,075 + CSW01_00960 0.69 +0.1
180,075 + CSW01_00960 0.69 +0.5
180,075 + CSW01_00960 0.69 +2.3
180,075 + CSW01_00960 0.69 -0.1
180,075 + CSW01_00960 0.69 -0.7
180,075 + CSW01_00960 0.69 +0.8
180,078 - CSW01_00960 0.69 -0.4
180,078 - CSW01_00960 0.69 -0.2
180,083 - CSW01_00960 0.70 -0.5
180,083 - CSW01_00960 0.70 +1.6
180,083 - CSW01_00960 0.70 -0.7
180,083 - CSW01_00960 0.70 -0.8
180,083 - CSW01_00960 0.70 +0.1
180,083 - CSW01_00960 0.70 +0.7
180,083 - CSW01_00960 0.70 -0.6
180,083 - CSW01_00960 0.70 -0.3
180,083 - CSW01_00960 0.70 +0.5
180,083 - CSW01_00960 0.70 -0.3
180,083 - CSW01_00960 0.70 +0.3
180,084 - CSW01_00960 0.70 +0.2
180,131 + CSW01_00960 0.74 -0.4
180,131 + CSW01_00960 0.74 -0.3
180,131 + CSW01_00960 0.74 +0.5
180,138 + CSW01_00960 0.75 +0.5
180,138 + CSW01_00960 0.75 -0.2
180,139 - CSW01_00960 0.75 -1.6
180,139 - CSW01_00960 0.75 +0.2
180,146 - CSW01_00960 0.76 -0.9
180,146 - CSW01_00960 0.76 -0.2
180,175 + CSW01_00960 0.78 -0.8
180,183 - CSW01_00960 0.79 +0.1
180,183 - CSW01_00960 0.79 +0.5
180,244 + CSW01_00960 0.85 -0.1
180,252 - CSW01_00960 0.85 +1.1
180,252 - CSW01_00960 0.85 -1.3
180,275 + CSW01_00960 0.88 +0.3
180,344 - +0.1
180,408 + +1.1
180,416 - -0.3
180,444 - -0.5
180,446 + +0.4
180,446 + +0.1
180,446 + +0.4
180,454 - +0.6
180,454 - -1.0
180,454 - +0.8
180,454 - -0.9
180,454 - -0.0
180,489 - -0.2
180,503 - -0.7
180,506 + +0.4
180,519 + +0.0
180,532 - -0.9
180,559 - CSW01_00965 0.11 +0.4
180,566 + CSW01_00965 0.11 -0.7
180,566 + CSW01_00965 0.11 +0.2
180,567 + CSW01_00965 0.11 -0.2
180,567 + CSW01_00965 0.11 +1.0
180,574 - CSW01_00965 0.12 -1.1
180,578 + CSW01_00965 0.12 +0.2
180,653 - CSW01_00965 0.18 -0.1
180,687 - CSW01_00965 0.20 +0.1
180,713 - CSW01_00965 0.22 +0.1
180,720 - CSW01_00965 0.23 +0.1
180,751 - CSW01_00965 0.25 +0.6
180,775 - CSW01_00965 0.27 -0.5
180,777 - CSW01_00965 0.27 +0.5
180,857 + CSW01_00965 0.33 -0.1
180,948 + CSW01_00965 0.40 +0.4
180,956 - CSW01_00965 0.41 +0.6
180,956 - CSW01_00965 0.41 +1.1
180,965 + CSW01_00965 0.42 +0.1
180,973 - CSW01_00965 0.42 +0.2
181,007 - CSW01_00965 0.45 -0.5
181,151 + CSW01_00965 0.56 -0.5
181,166 + CSW01_00965 0.57 -0.3
181,176 + CSW01_00965 0.58 -0.2
181,209 + CSW01_00965 0.60 -0.3
181,239 - CSW01_00965 0.62 +0.1
181,239 - CSW01_00965 0.62 +0.3
181,271 - CSW01_00965 0.65 +1.7
181,288 + CSW01_00965 0.66 +0.7
181,304 + CSW01_00965 0.67 +0.7
181,306 - CSW01_00965 0.68 +0.2
181,327 + CSW01_00965 0.69 -1.4
181,330 - CSW01_00965 0.69 +0.8

Or see this region's nucleotide sequence