Experiment: LB_Aerobic_18HR_ZN18A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00855 and CSW01_00860 are separated by 18 nucleotides CSW01_00860 and CSW01_00865 are separated by 145 nucleotides CSW01_00865 and CSW01_00870 are separated by 66 nucleotides CSW01_00870 and CSW01_00875 are separated by 289 nucleotides CSW01_00875 and CSW01_00880 are separated by 35 nucleotides
CSW01_00855: CSW01_00855 - MexH family multidrug efflux RND transporter periplasmic adaptor subunit, at 162,542 to 163,648
_00855
CSW01_00860: CSW01_00860 - TetR/AcrR family transcriptional regulator, at 163,667 to 164,263
_00860
CSW01_00865: CSW01_00865 - DNA helicase Rep, at 164,409 to 166,424
_00865
CSW01_00870: CSW01_00870 - cytochrome c5 family protein, at 166,491 to 166,898
_00870
CSW01_00875: CSW01_00875 - tRNA-Arg, at 167,188 to 167,264
_00875
CSW01_00880: CSW01_00880 - tRNA-His, at 167,300 to 167,375
_00880
Position (kb) 164
165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 163.422 kb on - strand, within CSW01_00855 at 163.443 kb on + strand, within CSW01_00855 at 163.443 kb on - strand, within CSW01_00855 at 163.456 kb on + strand, within CSW01_00855 at 163.464 kb on - strand, within CSW01_00855 at 163.506 kb on - strand, within CSW01_00855 at 163.587 kb on - strand at 163.604 kb on + strand at 163.660 kb on + strand at 163.668 kb on - strand at 163.756 kb on + strand, within CSW01_00860 at 163.802 kb on - strand, within CSW01_00860 at 163.841 kb on + strand, within CSW01_00860 at 163.930 kb on - strand, within CSW01_00860 at 163.956 kb on + strand, within CSW01_00860 at 163.989 kb on + strand, within CSW01_00860 at 164.030 kb on + strand, within CSW01_00860 at 164.221 kb on + strand at 164.221 kb on + strand at 164.221 kb on + strand at 164.228 kb on + strand at 164.228 kb on + strand at 164.229 kb on - strand at 164.229 kb on - strand at 164.229 kb on - strand at 164.238 kb on + strand at 164.244 kb on - strand at 164.246 kb on - strand at 164.354 kb on + strand at 164.414 kb on + strand at 166.319 kb on + strand at 166.357 kb on + strand at 166.408 kb on - strand at 166.491 kb on + strand at 166.511 kb on + strand at 166.609 kb on + strand, within CSW01_00870 at 166.609 kb on + strand, within CSW01_00870 at 166.617 kb on - strand, within CSW01_00870 at 166.617 kb on - strand, within CSW01_00870 at 166.666 kb on + strand, within CSW01_00870 at 166.683 kb on + strand, within CSW01_00870 at 166.683 kb on + strand, within CSW01_00870 at 166.744 kb on + strand, within CSW01_00870 at 166.794 kb on - strand, within CSW01_00870 at 166.794 kb on - strand, within CSW01_00870 at 166.859 kb on - strand at 166.872 kb on + strand at 166.880 kb on - strand at 167.004 kb on + strand at 167.068 kb on - strand at 167.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18A remove 163,422 - CSW01_00855 0.79 -1.0 163,443 + CSW01_00855 0.81 -0.4 163,443 - CSW01_00855 0.81 -0.4 163,456 + CSW01_00855 0.83 -1.4 163,464 - CSW01_00855 0.83 -0.9 163,506 - CSW01_00855 0.87 -0.5 163,587 - +0.7 163,604 + -0.9 163,660 + -1.1 163,668 - -0.5 163,756 + CSW01_00860 0.15 -0.8 163,802 - CSW01_00860 0.23 +0.7 163,841 + CSW01_00860 0.29 +0.2 163,930 - CSW01_00860 0.44 +0.4 163,956 + CSW01_00860 0.48 +0.2 163,989 + CSW01_00860 0.54 -1.6 164,030 + CSW01_00860 0.61 +1.0 164,221 + -0.8 164,221 + -0.1 164,221 + -0.2 164,228 + -0.6 164,228 + -0.4 164,229 - -2.1 164,229 - -1.3 164,229 - -1.6 164,238 + -0.2 164,244 - +0.1 164,246 - -0.1 164,354 + -0.9 164,414 + -1.1 166,319 + -1.6 166,357 + -0.3 166,408 - -1.2 166,491 + -1.0 166,511 + -0.1 166,609 + CSW01_00870 0.29 +0.1 166,609 + CSW01_00870 0.29 +1.0 166,617 - CSW01_00870 0.31 -3.0 166,617 - CSW01_00870 0.31 +1.6 166,666 + CSW01_00870 0.43 +1.7 166,683 + CSW01_00870 0.47 -2.0 166,683 + CSW01_00870 0.47 +1.1 166,744 + CSW01_00870 0.62 +1.4 166,794 - CSW01_00870 0.74 +0.7 166,794 - CSW01_00870 0.74 -0.0 166,859 - +0.7 166,872 + -0.9 166,880 - -0.0 167,004 + -0.3 167,068 - +0.1 167,068 - +0.3
Or see this region's nucleotide sequence