Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30050

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_30045 and AO356_30050 are separated by 15 nucleotidesAO356_30050 and AO356_30055 are separated by 75 nucleotides AO356_30045: AO356_30045 - potassium transporter, at 7,010,085 to 7,011,452 _30045 AO356_30050: AO356_30050 - aminomethyltransferase, at 7,011,468 to 7,013,810 _30050 AO356_30055: AO356_30055 - amino acid permease, at 7,013,886 to 7,015,565 _30055 Position (kb) 7011 7012 7013 7014Strain fitness (log2 ratio) -1 0 1at 7010.740 kb on - strand, within AO356_30045at 7010.740 kb on - strand, within AO356_30045at 7010.825 kb on - strand, within AO356_30045at 7010.980 kb on - strand, within AO356_30045at 7010.980 kb on - strand, within AO356_30045at 7011.207 kb on + strand, within AO356_30045at 7011.207 kb on + strand, within AO356_30045at 7011.705 kb on - strand, within AO356_30050at 7012.004 kb on - strand, within AO356_30050at 7012.495 kb on + strand, within AO356_30050at 7012.495 kb on + strand, within AO356_30050at 7012.694 kb on + strand, within AO356_30050at 7012.829 kb on + strand, within AO356_30050at 7012.830 kb on - strand, within AO356_30050at 7012.872 kb on + strand, within AO356_30050at 7012.872 kb on + strand, within AO356_30050at 7013.017 kb on - strand, within AO356_30050at 7013.863 kb on + strandat 7013.879 kb on + strandat 7013.879 kb on + strandat 7013.880 kb on - strandat 7013.897 kb on + strandat 7014.099 kb on + strand, within AO356_30055at 7014.100 kb on - strand, within AO356_30055at 7014.100 kb on - strand, within AO356_30055at 7014.264 kb on + strand, within AO356_30055at 7014.265 kb on - strand, within AO356_30055at 7014.397 kb on + strand, within AO356_30055at 7014.428 kb on + strand, within AO356_30055at 7014.678 kb on + strand, within AO356_30055at 7014.678 kb on + strand, within AO356_30055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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7,010,740 - AO356_30045 0.48 +0.5
7,010,740 - AO356_30045 0.48 -1.4
7,010,825 - AO356_30045 0.54 +0.8
7,010,980 - AO356_30045 0.65 -0.8
7,010,980 - AO356_30045 0.65 -0.6
7,011,207 + AO356_30045 0.82 +0.5
7,011,207 + AO356_30045 0.82 -0.9
7,011,705 - AO356_30050 0.10 -0.2
7,012,004 - AO356_30050 0.23 +0.3
7,012,495 + AO356_30050 0.44 -0.1
7,012,495 + AO356_30050 0.44 +0.8
7,012,694 + AO356_30050 0.52 +0.1
7,012,829 + AO356_30050 0.58 -0.7
7,012,830 - AO356_30050 0.58 +0.9
7,012,872 + AO356_30050 0.60 +0.2
7,012,872 + AO356_30050 0.60 +1.1
7,013,017 - AO356_30050 0.66 +1.7
7,013,863 + +1.0
7,013,879 + +0.5
7,013,879 + +0.5
7,013,880 - +0.2
7,013,897 + -0.4
7,014,099 + AO356_30055 0.13 -0.9
7,014,100 - AO356_30055 0.13 +0.4
7,014,100 - AO356_30055 0.13 -0.8
7,014,264 + AO356_30055 0.23 +1.0
7,014,265 - AO356_30055 0.23 +1.1
7,014,397 + AO356_30055 0.30 -0.1
7,014,428 + AO356_30055 0.32 -1.0
7,014,678 + AO356_30055 0.47 +1.3
7,014,678 + AO356_30055 0.47 +0.4

Or see this region's nucleotide sequence