Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27530

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27520 and AO356_27525 are separated by 106 nucleotidesAO356_27525 and AO356_27530 are separated by 200 nucleotidesAO356_27530 and AO356_27535 are separated by 122 nucleotides AO356_27520: AO356_27520 - betaine-aldehyde dehydrogenase, at 6,272,395 to 6,273,849 _27520 AO356_27525: AO356_27525 - cytochrome B, at 6,273,956 to 6,274,519 _27525 AO356_27530: AO356_27530 - hypothetical protein, at 6,274,720 to 6,278,454 _27530 AO356_27535: AO356_27535 - channel protein TolC, at 6,278,577 to 6,279,884 _27535 Position (kb) 6274 6275 6276 6277 6278 6279Strain fitness (log2 ratio) -2 -1 0 1 2at 6273.808 kb on + strandat 6274.097 kb on + strand, within AO356_27525at 6274.098 kb on - strand, within AO356_27525at 6274.098 kb on - strand, within AO356_27525at 6274.106 kb on + strand, within AO356_27525at 6274.150 kb on - strand, within AO356_27525at 6274.221 kb on - strand, within AO356_27525at 6274.260 kb on - strand, within AO356_27525at 6274.418 kb on + strand, within AO356_27525at 6274.475 kb on + strandat 6274.476 kb on - strandat 6274.534 kb on - strandat 6274.608 kb on - strandat 6274.679 kb on + strandat 6274.719 kb on - strandat 6275.098 kb on - strand, within AO356_27530at 6275.278 kb on + strand, within AO356_27530at 6275.279 kb on - strand, within AO356_27530at 6275.279 kb on - strand, within AO356_27530at 6275.282 kb on + strand, within AO356_27530at 6275.282 kb on + strand, within AO356_27530at 6275.282 kb on + strand, within AO356_27530at 6275.282 kb on + strand, within AO356_27530at 6275.283 kb on - strand, within AO356_27530at 6275.283 kb on - strand, within AO356_27530at 6275.308 kb on - strand, within AO356_27530at 6275.308 kb on - strand, within AO356_27530at 6275.866 kb on - strand, within AO356_27530at 6275.866 kb on - strand, within AO356_27530at 6275.866 kb on - strand, within AO356_27530at 6275.866 kb on - strand, within AO356_27530at 6276.116 kb on + strand, within AO356_27530at 6276.116 kb on + strand, within AO356_27530at 6276.117 kb on - strand, within AO356_27530at 6276.117 kb on - strand, within AO356_27530at 6276.326 kb on - strand, within AO356_27530at 6276.326 kb on - strand, within AO356_27530at 6276.326 kb on - strand, within AO356_27530at 6276.326 kb on - strand, within AO356_27530at 6276.326 kb on - strand, within AO356_27530at 6276.389 kb on - strand, within AO356_27530at 6276.392 kb on + strand, within AO356_27530at 6276.392 kb on + strand, within AO356_27530at 6276.393 kb on - strand, within AO356_27530at 6276.393 kb on - strand, within AO356_27530at 6276.393 kb on - strand, within AO356_27530at 6276.393 kb on - strand, within AO356_27530at 6276.393 kb on - strand, within AO356_27530at 6276.393 kb on - strand, within AO356_27530at 6276.393 kb on - strand, within AO356_27530at 6276.393 kb on - strand, within AO356_27530at 6276.393 kb on - strand, within AO356_27530at 6277.226 kb on + strand, within AO356_27530at 6277.226 kb on + strand, within AO356_27530at 6277.227 kb on - strand, within AO356_27530at 6277.391 kb on + strand, within AO356_27530at 6277.475 kb on + strand, within AO356_27530at 6277.475 kb on + strand, within AO356_27530at 6277.475 kb on + strand, within AO356_27530at 6277.476 kb on - strand, within AO356_27530at 6277.507 kb on - strand, within AO356_27530at 6277.759 kb on - strand, within AO356_27530at 6277.759 kb on - strand, within AO356_27530at 6277.792 kb on - strand, within AO356_27530at 6277.793 kb on + strand, within AO356_27530at 6277.884 kb on - strand, within AO356_27530at 6278.030 kb on + strand, within AO356_27530at 6278.030 kb on + strand, within AO356_27530at 6278.030 kb on + strand, within AO356_27530at 6278.031 kb on - strand, within AO356_27530at 6278.031 kb on - strand, within AO356_27530at 6278.031 kb on - strand, within AO356_27530at 6278.139 kb on + strandat 6278.289 kb on - strandat 6278.345 kb on + strandat 6278.346 kb on - strandat 6278.370 kb on - strandat 6278.370 kb on - strandat 6278.435 kb on + strandat 6278.502 kb on - strandat 6278.522 kb on + strandat 6278.523 kb on - strandat 6278.578 kb on + strandat 6278.579 kb on - strandat 6278.579 kb on - strandat 6278.649 kb on + strandat 6278.649 kb on + strandat 6278.649 kb on + strandat 6278.655 kb on + strandat 6278.655 kb on + strandat 6278.656 kb on - strandat 6278.674 kb on + strandat 6278.686 kb on + strandat 6278.854 kb on + strand, within AO356_27535at 6279.413 kb on + strand, within AO356_27535

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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6,273,808 + +0.9
6,274,097 + AO356_27525 0.25 +0.4
6,274,098 - AO356_27525 0.25 -0.7
6,274,098 - AO356_27525 0.25 +0.3
6,274,106 + AO356_27525 0.27 +1.6
6,274,150 - AO356_27525 0.34 -0.3
6,274,221 - AO356_27525 0.47 -0.0
6,274,260 - AO356_27525 0.54 +0.8
6,274,418 + AO356_27525 0.82 -0.4
6,274,475 + -0.7
6,274,476 - -0.7
6,274,534 - -0.4
6,274,608 - -0.6
6,274,679 + -1.3
6,274,719 - +0.3
6,275,098 - AO356_27530 0.10 -0.7
6,275,278 + AO356_27530 0.15 +0.7
6,275,279 - AO356_27530 0.15 +0.8
6,275,279 - AO356_27530 0.15 -1.0
6,275,282 + AO356_27530 0.15 +1.4
6,275,282 + AO356_27530 0.15 +1.0
6,275,282 + AO356_27530 0.15 -0.4
6,275,282 + AO356_27530 0.15 -0.3
6,275,283 - AO356_27530 0.15 +0.0
6,275,283 - AO356_27530 0.15 +0.1
6,275,308 - AO356_27530 0.16 -0.3
6,275,308 - AO356_27530 0.16 +1.2
6,275,866 - AO356_27530 0.31 -1.5
6,275,866 - AO356_27530 0.31 +0.4
6,275,866 - AO356_27530 0.31 +0.0
6,275,866 - AO356_27530 0.31 +1.6
6,276,116 + AO356_27530 0.37 +0.0
6,276,116 + AO356_27530 0.37 +0.4
6,276,117 - AO356_27530 0.37 +0.4
6,276,117 - AO356_27530 0.37 -1.5
6,276,326 - AO356_27530 0.43 -0.3
6,276,326 - AO356_27530 0.43 +1.6
6,276,326 - AO356_27530 0.43 +0.5
6,276,326 - AO356_27530 0.43 -1.4
6,276,326 - AO356_27530 0.43 +0.2
6,276,389 - AO356_27530 0.45 -0.1
6,276,392 + AO356_27530 0.45 +0.5
6,276,392 + AO356_27530 0.45 -0.3
6,276,393 - AO356_27530 0.45 -0.7
6,276,393 - AO356_27530 0.45 -0.3
6,276,393 - AO356_27530 0.45 -2.1
6,276,393 - AO356_27530 0.45 +0.0
6,276,393 - AO356_27530 0.45 -0.1
6,276,393 - AO356_27530 0.45 +0.5
6,276,393 - AO356_27530 0.45 -1.2
6,276,393 - AO356_27530 0.45 -0.1
6,276,393 - AO356_27530 0.45 -2.5
6,277,226 + AO356_27530 0.67 +1.2
6,277,226 + AO356_27530 0.67 +1.8
6,277,227 - AO356_27530 0.67 -0.9
6,277,391 + AO356_27530 0.72 -0.2
6,277,475 + AO356_27530 0.74 +0.5
6,277,475 + AO356_27530 0.74 +0.2
6,277,475 + AO356_27530 0.74 +0.2
6,277,476 - AO356_27530 0.74 +1.6
6,277,507 - AO356_27530 0.75 +0.6
6,277,759 - AO356_27530 0.81 +0.3
6,277,759 - AO356_27530 0.81 +0.5
6,277,792 - AO356_27530 0.82 +0.5
6,277,793 + AO356_27530 0.82 -0.9
6,277,884 - AO356_27530 0.85 -0.2
6,278,030 + AO356_27530 0.89 -0.8
6,278,030 + AO356_27530 0.89 +0.8
6,278,030 + AO356_27530 0.89 -0.7
6,278,031 - AO356_27530 0.89 +0.0
6,278,031 - AO356_27530 0.89 +1.8
6,278,031 - AO356_27530 0.89 -0.1
6,278,139 + +0.5
6,278,289 - -1.5
6,278,345 + +0.4
6,278,346 - -0.7
6,278,370 - -1.8
6,278,370 - +0.7
6,278,435 + +0.6
6,278,502 - -0.0
6,278,522 + +1.1
6,278,523 - -1.3
6,278,578 + -0.7
6,278,579 - -0.8
6,278,579 - -0.1
6,278,649 + +0.5
6,278,649 + -1.0
6,278,649 + +0.6
6,278,655 + +0.2
6,278,655 + -0.4
6,278,656 - -0.7
6,278,674 + -1.1
6,278,686 + -0.3
6,278,854 + AO356_27535 0.21 -0.8
6,279,413 + AO356_27535 0.64 -1.5

Or see this region's nucleotide sequence