Experiment: D-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21285 and AO356_21290 are separated by 238 nucleotides AO356_21290 and AO356_21295 are separated by 228 nucleotides
AO356_21285: AO356_21285 - histidine kinase, at 4,774,584 to 4,775,897
_21285
AO356_21290: AO356_21290 - sodium:proton antiporter, at 4,776,136 to 4,777,455
_21290
AO356_21295: AO356_21295 - chemotaxis protein, at 4,777,684 to 4,779,363
_21295
Position (kb)
4776
4777
4778 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4775.547 kb on + strand, within AO356_21285 at 4775.547 kb on + strand, within AO356_21285 at 4775.547 kb on + strand, within AO356_21285 at 4775.547 kb on + strand, within AO356_21285 at 4775.547 kb on + strand, within AO356_21285 at 4775.547 kb on + strand, within AO356_21285 at 4775.548 kb on - strand, within AO356_21285 at 4775.548 kb on - strand, within AO356_21285 at 4775.548 kb on - strand, within AO356_21285 at 4775.548 kb on - strand, within AO356_21285 at 4775.548 kb on - strand, within AO356_21285 at 4775.548 kb on - strand, within AO356_21285 at 4775.548 kb on - strand, within AO356_21285 at 4775.548 kb on - strand, within AO356_21285 at 4775.974 kb on - strand at 4776.131 kb on + strand at 4776.140 kb on + strand at 4776.141 kb on - strand at 4776.141 kb on - strand at 4776.141 kb on - strand at 4776.149 kb on + strand at 4776.149 kb on + strand at 4776.149 kb on + strand at 4776.150 kb on - strand at 4776.150 kb on - strand at 4776.320 kb on - strand, within AO356_21290 at 4776.538 kb on + strand, within AO356_21290 at 4776.538 kb on + strand, within AO356_21290 at 4776.538 kb on + strand, within AO356_21290 at 4776.610 kb on + strand, within AO356_21290 at 4776.610 kb on + strand, within AO356_21290 at 4776.610 kb on + strand, within AO356_21290 at 4776.611 kb on - strand, within AO356_21290 at 4776.611 kb on - strand, within AO356_21290 at 4776.611 kb on - strand, within AO356_21290 at 4776.611 kb on - strand, within AO356_21290 at 4776.611 kb on - strand, within AO356_21290 at 4776.611 kb on - strand, within AO356_21290 at 4776.639 kb on + strand, within AO356_21290 at 4776.640 kb on - strand, within AO356_21290 at 4776.640 kb on - strand, within AO356_21290 at 4776.790 kb on + strand, within AO356_21290 at 4776.790 kb on + strand, within AO356_21290 at 4776.835 kb on + strand, within AO356_21290 at 4776.836 kb on - strand, within AO356_21290 at 4776.836 kb on - strand, within AO356_21290 at 4777.405 kb on + strand at 4777.405 kb on + strand at 4777.406 kb on - strand at 4777.406 kb on - strand at 4777.453 kb on + strand at 4777.453 kb on + strand at 4777.640 kb on + strand at 4777.643 kb on + strand at 4777.644 kb on - strand at 4777.644 kb on - strand at 4777.644 kb on - strand at 4777.649 kb on + strand at 4777.650 kb on - strand at 4777.668 kb on + strand at 4777.668 kb on + strand at 4777.668 kb on + strand at 4777.669 kb on - strand at 4777.704 kb on + strand at 4777.705 kb on - strand at 4777.791 kb on + strand at 4777.792 kb on - strand at 4777.792 kb on - strand at 4777.792 kb on - strand at 4777.855 kb on + strand, within AO356_21295 at 4777.856 kb on - strand, within AO356_21295 at 4777.856 kb on - strand, within AO356_21295 at 4777.856 kb on - strand, within AO356_21295 at 4777.891 kb on + strand, within AO356_21295 at 4777.960 kb on + strand, within AO356_21295 at 4778.077 kb on + strand, within AO356_21295 at 4778.077 kb on + strand, within AO356_21295 at 4778.078 kb on - strand, within AO356_21295 at 4778.078 kb on - strand, within AO356_21295 at 4778.131 kb on + strand, within AO356_21295 at 4778.179 kb on + strand, within AO356_21295 at 4778.188 kb on + strand, within AO356_21295 at 4778.188 kb on + strand, within AO356_21295 at 4778.189 kb on - strand, within AO356_21295 at 4778.189 kb on - strand, within AO356_21295 at 4778.218 kb on - strand, within AO356_21295 at 4778.239 kb on - strand, within AO356_21295
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (N) remove 4,775,547 + AO356_21285 0.73 -0.7 4,775,547 + AO356_21285 0.73 +0.1 4,775,547 + AO356_21285 0.73 -1.3 4,775,547 + AO356_21285 0.73 -1.2 4,775,547 + AO356_21285 0.73 -0.2 4,775,547 + AO356_21285 0.73 -1.3 4,775,548 - AO356_21285 0.73 -0.2 4,775,548 - AO356_21285 0.73 +0.1 4,775,548 - AO356_21285 0.73 +1.1 4,775,548 - AO356_21285 0.73 -0.6 4,775,548 - AO356_21285 0.73 -0.3 4,775,548 - AO356_21285 0.73 +0.1 4,775,548 - AO356_21285 0.73 -0.6 4,775,548 - AO356_21285 0.73 -0.1 4,775,974 - +0.1 4,776,131 + +0.1 4,776,140 + -0.4 4,776,141 - +0.5 4,776,141 - -0.8 4,776,141 - +0.4 4,776,149 + +0.7 4,776,149 + +0.1 4,776,149 + +0.5 4,776,150 - +0.0 4,776,150 - -0.2 4,776,320 - AO356_21290 0.14 -0.4 4,776,538 + AO356_21290 0.30 +1.1 4,776,538 + AO356_21290 0.30 -0.1 4,776,538 + AO356_21290 0.30 -0.6 4,776,610 + AO356_21290 0.36 +2.0 4,776,610 + AO356_21290 0.36 -1.9 4,776,610 + AO356_21290 0.36 +0.6 4,776,611 - AO356_21290 0.36 +1.8 4,776,611 - AO356_21290 0.36 -0.4 4,776,611 - AO356_21290 0.36 -1.3 4,776,611 - AO356_21290 0.36 +0.0 4,776,611 - AO356_21290 0.36 +0.8 4,776,611 - AO356_21290 0.36 +0.5 4,776,639 + AO356_21290 0.38 +0.3 4,776,640 - AO356_21290 0.38 -0.2 4,776,640 - AO356_21290 0.38 -0.4 4,776,790 + AO356_21290 0.50 -0.6 4,776,790 + AO356_21290 0.50 +0.1 4,776,835 + AO356_21290 0.53 +0.7 4,776,836 - AO356_21290 0.53 +1.1 4,776,836 - AO356_21290 0.53 +1.0 4,777,405 + -0.5 4,777,405 + +0.6 4,777,406 - +2.1 4,777,406 - +1.1 4,777,453 + +0.5 4,777,453 + -0.2 4,777,640 + +0.1 4,777,643 + +0.5 4,777,644 - -0.9 4,777,644 - +0.3 4,777,644 - +0.1 4,777,649 + -0.2 4,777,650 - +0.4 4,777,668 + +0.2 4,777,668 + +0.8 4,777,668 + +0.6 4,777,669 - -0.4 4,777,704 + -0.1 4,777,705 - -0.2 4,777,791 + +0.2 4,777,792 - -0.4 4,777,792 - +0.8 4,777,792 - +0.1 4,777,855 + AO356_21295 0.10 +0.6 4,777,856 - AO356_21295 0.10 +0.0 4,777,856 - AO356_21295 0.10 +0.1 4,777,856 - AO356_21295 0.10 +1.0 4,777,891 + AO356_21295 0.12 -0.0 4,777,960 + AO356_21295 0.16 +1.4 4,778,077 + AO356_21295 0.23 -0.8 4,778,077 + AO356_21295 0.23 +0.8 4,778,078 - AO356_21295 0.23 -0.0 4,778,078 - AO356_21295 0.23 +0.2 4,778,131 + AO356_21295 0.27 +0.5 4,778,179 + AO356_21295 0.29 +0.8 4,778,188 + AO356_21295 0.30 -0.1 4,778,188 + AO356_21295 0.30 -0.3 4,778,189 - AO356_21295 0.30 +0.7 4,778,189 - AO356_21295 0.30 +0.4 4,778,218 - AO356_21295 0.32 +0.6 4,778,239 - AO356_21295 0.33 +0.3
Or see this region's nucleotide sequence