Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21290

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21285 and AO356_21290 are separated by 238 nucleotidesAO356_21290 and AO356_21295 are separated by 228 nucleotides AO356_21285: AO356_21285 - histidine kinase, at 4,774,584 to 4,775,897 _21285 AO356_21290: AO356_21290 - sodium:proton antiporter, at 4,776,136 to 4,777,455 _21290 AO356_21295: AO356_21295 - chemotaxis protein, at 4,777,684 to 4,779,363 _21295 Position (kb) 4776 4777 4778Strain fitness (log2 ratio) -2 -1 0 1 2at 4775.547 kb on + strand, within AO356_21285at 4775.547 kb on + strand, within AO356_21285at 4775.547 kb on + strand, within AO356_21285at 4775.547 kb on + strand, within AO356_21285at 4775.547 kb on + strand, within AO356_21285at 4775.547 kb on + strand, within AO356_21285at 4775.548 kb on - strand, within AO356_21285at 4775.548 kb on - strand, within AO356_21285at 4775.548 kb on - strand, within AO356_21285at 4775.548 kb on - strand, within AO356_21285at 4775.548 kb on - strand, within AO356_21285at 4775.548 kb on - strand, within AO356_21285at 4775.548 kb on - strand, within AO356_21285at 4775.548 kb on - strand, within AO356_21285at 4775.974 kb on - strandat 4776.131 kb on + strandat 4776.140 kb on + strandat 4776.141 kb on - strandat 4776.141 kb on - strandat 4776.141 kb on - strandat 4776.149 kb on + strandat 4776.149 kb on + strandat 4776.149 kb on + strandat 4776.150 kb on - strandat 4776.150 kb on - strandat 4776.320 kb on - strand, within AO356_21290at 4776.538 kb on + strand, within AO356_21290at 4776.538 kb on + strand, within AO356_21290at 4776.538 kb on + strand, within AO356_21290at 4776.610 kb on + strand, within AO356_21290at 4776.610 kb on + strand, within AO356_21290at 4776.610 kb on + strand, within AO356_21290at 4776.611 kb on - strand, within AO356_21290at 4776.611 kb on - strand, within AO356_21290at 4776.611 kb on - strand, within AO356_21290at 4776.611 kb on - strand, within AO356_21290at 4776.611 kb on - strand, within AO356_21290at 4776.611 kb on - strand, within AO356_21290at 4776.639 kb on + strand, within AO356_21290at 4776.640 kb on - strand, within AO356_21290at 4776.640 kb on - strand, within AO356_21290at 4776.790 kb on + strand, within AO356_21290at 4776.790 kb on + strand, within AO356_21290at 4776.835 kb on + strand, within AO356_21290at 4776.836 kb on - strand, within AO356_21290at 4776.836 kb on - strand, within AO356_21290at 4777.405 kb on + strandat 4777.405 kb on + strandat 4777.406 kb on - strandat 4777.406 kb on - strandat 4777.453 kb on + strandat 4777.453 kb on + strandat 4777.640 kb on + strandat 4777.643 kb on + strandat 4777.644 kb on - strandat 4777.644 kb on - strandat 4777.644 kb on - strandat 4777.649 kb on + strandat 4777.650 kb on - strandat 4777.668 kb on + strandat 4777.668 kb on + strandat 4777.668 kb on + strandat 4777.669 kb on - strandat 4777.704 kb on + strandat 4777.705 kb on - strandat 4777.791 kb on + strandat 4777.792 kb on - strandat 4777.792 kb on - strandat 4777.792 kb on - strandat 4777.855 kb on + strand, within AO356_21295at 4777.856 kb on - strand, within AO356_21295at 4777.856 kb on - strand, within AO356_21295at 4777.856 kb on - strand, within AO356_21295at 4777.891 kb on + strand, within AO356_21295at 4777.960 kb on + strand, within AO356_21295at 4778.077 kb on + strand, within AO356_21295at 4778.077 kb on + strand, within AO356_21295at 4778.078 kb on - strand, within AO356_21295at 4778.078 kb on - strand, within AO356_21295at 4778.131 kb on + strand, within AO356_21295at 4778.179 kb on + strand, within AO356_21295at 4778.188 kb on + strand, within AO356_21295at 4778.188 kb on + strand, within AO356_21295at 4778.189 kb on - strand, within AO356_21295at 4778.189 kb on - strand, within AO356_21295at 4778.218 kb on - strand, within AO356_21295at 4778.239 kb on - strand, within AO356_21295

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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4,775,547 + AO356_21285 0.73 -0.7
4,775,547 + AO356_21285 0.73 +0.1
4,775,547 + AO356_21285 0.73 -1.3
4,775,547 + AO356_21285 0.73 -1.2
4,775,547 + AO356_21285 0.73 -0.2
4,775,547 + AO356_21285 0.73 -1.3
4,775,548 - AO356_21285 0.73 -0.2
4,775,548 - AO356_21285 0.73 +0.1
4,775,548 - AO356_21285 0.73 +1.1
4,775,548 - AO356_21285 0.73 -0.6
4,775,548 - AO356_21285 0.73 -0.3
4,775,548 - AO356_21285 0.73 +0.1
4,775,548 - AO356_21285 0.73 -0.6
4,775,548 - AO356_21285 0.73 -0.1
4,775,974 - +0.1
4,776,131 + +0.1
4,776,140 + -0.4
4,776,141 - +0.5
4,776,141 - -0.8
4,776,141 - +0.4
4,776,149 + +0.7
4,776,149 + +0.1
4,776,149 + +0.5
4,776,150 - +0.0
4,776,150 - -0.2
4,776,320 - AO356_21290 0.14 -0.4
4,776,538 + AO356_21290 0.30 +1.1
4,776,538 + AO356_21290 0.30 -0.1
4,776,538 + AO356_21290 0.30 -0.6
4,776,610 + AO356_21290 0.36 +2.0
4,776,610 + AO356_21290 0.36 -1.9
4,776,610 + AO356_21290 0.36 +0.6
4,776,611 - AO356_21290 0.36 +1.8
4,776,611 - AO356_21290 0.36 -0.4
4,776,611 - AO356_21290 0.36 -1.3
4,776,611 - AO356_21290 0.36 +0.0
4,776,611 - AO356_21290 0.36 +0.8
4,776,611 - AO356_21290 0.36 +0.5
4,776,639 + AO356_21290 0.38 +0.3
4,776,640 - AO356_21290 0.38 -0.2
4,776,640 - AO356_21290 0.38 -0.4
4,776,790 + AO356_21290 0.50 -0.6
4,776,790 + AO356_21290 0.50 +0.1
4,776,835 + AO356_21290 0.53 +0.7
4,776,836 - AO356_21290 0.53 +1.1
4,776,836 - AO356_21290 0.53 +1.0
4,777,405 + -0.5
4,777,405 + +0.6
4,777,406 - +2.1
4,777,406 - +1.1
4,777,453 + +0.5
4,777,453 + -0.2
4,777,640 + +0.1
4,777,643 + +0.5
4,777,644 - -0.9
4,777,644 - +0.3
4,777,644 - +0.1
4,777,649 + -0.2
4,777,650 - +0.4
4,777,668 + +0.2
4,777,668 + +0.8
4,777,668 + +0.6
4,777,669 - -0.4
4,777,704 + -0.1
4,777,705 - -0.2
4,777,791 + +0.2
4,777,792 - -0.4
4,777,792 - +0.8
4,777,792 - +0.1
4,777,855 + AO356_21295 0.10 +0.6
4,777,856 - AO356_21295 0.10 +0.0
4,777,856 - AO356_21295 0.10 +0.1
4,777,856 - AO356_21295 0.10 +1.0
4,777,891 + AO356_21295 0.12 -0.0
4,777,960 + AO356_21295 0.16 +1.4
4,778,077 + AO356_21295 0.23 -0.8
4,778,077 + AO356_21295 0.23 +0.8
4,778,078 - AO356_21295 0.23 -0.0
4,778,078 - AO356_21295 0.23 +0.2
4,778,131 + AO356_21295 0.27 +0.5
4,778,179 + AO356_21295 0.29 +0.8
4,778,188 + AO356_21295 0.30 -0.1
4,778,188 + AO356_21295 0.30 -0.3
4,778,189 - AO356_21295 0.30 +0.7
4,778,189 - AO356_21295 0.30 +0.4
4,778,218 - AO356_21295 0.32 +0.6
4,778,239 - AO356_21295 0.33 +0.3

Or see this region's nucleotide sequence