Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16920

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16915 and AO356_16920 are separated by 139 nucleotidesAO356_16920 and AO356_16925 are separated by 180 nucleotides AO356_16915: AO356_16915 - AraC family transcriptional regulator, at 3,812,158 to 3,813,033 _16915 AO356_16920: AO356_16920 - hypothetical protein, at 3,813,173 to 3,814,075 _16920 AO356_16925: AO356_16925 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 3,814,256 to 3,815,227 _16925 Position (kb) 3813 3814 3815Strain fitness (log2 ratio) -2 -1 0 1 2at 3812.181 kb on - strandat 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.326 kb on + strand, within AO356_16915at 3812.327 kb on - strand, within AO356_16915at 3812.327 kb on - strand, within AO356_16915at 3812.327 kb on - strand, within AO356_16915at 3812.327 kb on - strand, within AO356_16915at 3812.327 kb on - strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.330 kb on + strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.331 kb on - strand, within AO356_16915at 3812.382 kb on - strand, within AO356_16915at 3812.450 kb on + strand, within AO356_16915at 3812.450 kb on + strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.451 kb on - strand, within AO356_16915at 3812.732 kb on + strand, within AO356_16915at 3812.732 kb on + strand, within AO356_16915at 3812.733 kb on - strand, within AO356_16915at 3812.733 kb on - strand, within AO356_16915at 3812.794 kb on + strand, within AO356_16915at 3812.847 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.867 kb on + strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.868 kb on - strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.880 kb on + strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.881 kb on - strand, within AO356_16915at 3812.900 kb on + strand, within AO356_16915at 3812.901 kb on - strand, within AO356_16915at 3812.901 kb on - strand, within AO356_16915at 3813.062 kb on + strandat 3813.062 kb on + strandat 3813.062 kb on + strandat 3813.113 kb on + strandat 3813.114 kb on - strandat 3813.114 kb on - strandat 3813.114 kb on - strandat 3813.114 kb on - strandat 3813.188 kb on + strandat 3813.188 kb on + strandat 3813.189 kb on - strandat 3813.189 kb on - strandat 3813.196 kb on + strandat 3813.197 kb on - strandat 3813.197 kb on - strandat 3813.276 kb on - strand, within AO356_16920at 3813.734 kb on + strand, within AO356_16920at 3813.734 kb on + strand, within AO356_16920at 3813.735 kb on - strand, within AO356_16920at 3813.806 kb on + strand, within AO356_16920at 3813.824 kb on + strand, within AO356_16920at 3813.824 kb on + strand, within AO356_16920at 3813.825 kb on - strand, within AO356_16920at 3813.825 kb on - strand, within AO356_16920at 3813.863 kb on + strand, within AO356_16920at 3813.905 kb on + strand, within AO356_16920at 3813.905 kb on + strand, within AO356_16920at 3813.906 kb on - strand, within AO356_16920at 3814.078 kb on + strandat 3814.078 kb on + strandat 3814.078 kb on + strandat 3814.078 kb on + strandat 3814.078 kb on + strandat 3814.078 kb on + strandat 3814.078 kb on + strandat 3814.079 kb on - strandat 3814.079 kb on - strandat 3814.079 kb on - strandat 3814.079 kb on - strandat 3814.079 kb on - strandat 3814.079 kb on - strandat 3814.079 kb on - strandat 3814.079 kb on - strandat 3814.079 kb on - strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.080 kb on + strandat 3814.081 kb on - strandat 3814.081 kb on - strandat 3814.081 kb on - strandat 3814.081 kb on - strandat 3814.081 kb on - strandat 3814.081 kb on - strandat 3814.081 kb on - strandat 3814.081 kb on - strandat 3814.081 kb on - strandat 3814.081 kb on - strandat 3814.094 kb on - strandat 3814.148 kb on + strandat 3814.148 kb on + strandat 3814.148 kb on + strandat 3814.149 kb on - strandat 3814.149 kb on - strandat 3814.149 kb on - strandat 3814.149 kb on - strandat 3814.149 kb on - strandat 3814.149 kb on - strandat 3814.321 kb on + strandat 3814.322 kb on - strandat 3814.322 kb on - strandat 3814.441 kb on - strand, within AO356_16925at 3814.505 kb on + strand, within AO356_16925at 3814.707 kb on + strand, within AO356_16925at 3814.707 kb on + strand, within AO356_16925at 3814.708 kb on - strand, within AO356_16925at 3814.708 kb on - strand, within AO356_16925at 3814.711 kb on + strand, within AO356_16925at 3814.711 kb on + strand, within AO356_16925at 3814.711 kb on + strand, within AO356_16925at 3814.712 kb on - strand, within AO356_16925at 3814.799 kb on + strand, within AO356_16925at 3814.799 kb on + strand, within AO356_16925at 3814.799 kb on + strand, within AO356_16925at 3814.799 kb on + strand, within AO356_16925at 3814.799 kb on + strand, within AO356_16925at 3814.799 kb on + strand, within AO356_16925at 3814.799 kb on + strand, within AO356_16925at 3814.799 kb on + strand, within AO356_16925at 3814.799 kb on + strand, within AO356_16925at 3814.799 kb on + strand, within AO356_16925at 3814.800 kb on - strand, within AO356_16925at 3814.800 kb on - strand, within AO356_16925at 3814.800 kb on - strand, within AO356_16925at 3814.800 kb on - strand, within AO356_16925at 3814.800 kb on - strand, within AO356_16925at 3814.800 kb on - strand, within AO356_16925at 3814.800 kb on - strand, within AO356_16925at 3814.800 kb on - strand, within AO356_16925at 3814.977 kb on + strand, within AO356_16925at 3814.977 kb on + strand, within AO356_16925at 3814.977 kb on + strand, within AO356_16925at 3814.977 kb on + strand, within AO356_16925at 3814.989 kb on + strand, within AO356_16925at 3814.989 kb on + strand, within AO356_16925at 3814.989 kb on + strand, within AO356_16925at 3814.989 kb on + strand, within AO356_16925at 3814.989 kb on + strand, within AO356_16925at 3814.989 kb on + strand, within AO356_16925at 3814.989 kb on + strand, within AO356_16925at 3814.989 kb on + strand, within AO356_16925at 3814.989 kb on + strand, within AO356_16925at 3814.989 kb on + strand, within AO356_16925at 3814.990 kb on - strand, within AO356_16925at 3814.990 kb on - strand, within AO356_16925at 3814.990 kb on - strand, within AO356_16925at 3814.999 kb on - strand, within AO356_16925

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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3,812,181 - -1.0
3,812,326 + AO356_16915 0.19 -0.1
3,812,326 + AO356_16915 0.19 +1.1
3,812,326 + AO356_16915 0.19 +0.4
3,812,326 + AO356_16915 0.19 +0.1
3,812,326 + AO356_16915 0.19 -1.6
3,812,326 + AO356_16915 0.19 +0.1
3,812,326 + AO356_16915 0.19 -0.5
3,812,327 - AO356_16915 0.19 -2.2
3,812,327 - AO356_16915 0.19 +0.4
3,812,327 - AO356_16915 0.19 +0.9
3,812,327 - AO356_16915 0.19 -0.3
3,812,327 - AO356_16915 0.19 +0.4
3,812,330 + AO356_16915 0.20 +0.4
3,812,330 + AO356_16915 0.20 +0.0
3,812,330 + AO356_16915 0.20 +0.5
3,812,330 + AO356_16915 0.20 -0.3
3,812,330 + AO356_16915 0.20 +0.3
3,812,330 + AO356_16915 0.20 +0.7
3,812,330 + AO356_16915 0.20 +0.5
3,812,330 + AO356_16915 0.20 +1.2
3,812,330 + AO356_16915 0.20 -0.1
3,812,330 + AO356_16915 0.20 +0.3
3,812,331 - AO356_16915 0.20 -1.1
3,812,331 - AO356_16915 0.20 -0.3
3,812,331 - AO356_16915 0.20 +0.4
3,812,331 - AO356_16915 0.20 +0.2
3,812,331 - AO356_16915 0.20 +1.1
3,812,331 - AO356_16915 0.20 +0.1
3,812,331 - AO356_16915 0.20 +0.2
3,812,331 - AO356_16915 0.20 +1.0
3,812,331 - AO356_16915 0.20 +0.9
3,812,331 - AO356_16915 0.20 +1.1
3,812,382 - AO356_16915 0.26 +0.8
3,812,450 + AO356_16915 0.33 +0.2
3,812,450 + AO356_16915 0.33 +0.4
3,812,451 - AO356_16915 0.33 -0.5
3,812,451 - AO356_16915 0.33 -0.1
3,812,451 - AO356_16915 0.33 +0.2
3,812,451 - AO356_16915 0.33 +0.3
3,812,451 - AO356_16915 0.33 -1.1
3,812,451 - AO356_16915 0.33 +0.2
3,812,732 + AO356_16915 0.66 +0.1
3,812,732 + AO356_16915 0.66 +1.5
3,812,733 - AO356_16915 0.66 -0.5
3,812,733 - AO356_16915 0.66 +0.2
3,812,794 + AO356_16915 0.73 -0.3
3,812,847 + AO356_16915 0.79 -0.2
3,812,867 + AO356_16915 0.81 -0.0
3,812,867 + AO356_16915 0.81 -0.3
3,812,867 + AO356_16915 0.81 +0.5
3,812,867 + AO356_16915 0.81 +0.7
3,812,867 + AO356_16915 0.81 -0.4
3,812,867 + AO356_16915 0.81 -0.1
3,812,868 - AO356_16915 0.81 +0.6
3,812,868 - AO356_16915 0.81 -0.0
3,812,868 - AO356_16915 0.81 -1.0
3,812,868 - AO356_16915 0.81 -0.6
3,812,868 - AO356_16915 0.81 -0.1
3,812,868 - AO356_16915 0.81 +0.7
3,812,880 + AO356_16915 0.82 -0.3
3,812,880 + AO356_16915 0.82 +0.8
3,812,880 + AO356_16915 0.82 +0.2
3,812,880 + AO356_16915 0.82 -1.3
3,812,880 + AO356_16915 0.82 +0.6
3,812,880 + AO356_16915 0.82 -0.1
3,812,880 + AO356_16915 0.82 -0.9
3,812,880 + AO356_16915 0.82 +0.4
3,812,880 + AO356_16915 0.82 +0.0
3,812,880 + AO356_16915 0.82 +1.4
3,812,880 + AO356_16915 0.82 +0.4
3,812,881 - AO356_16915 0.83 +0.3
3,812,881 - AO356_16915 0.83 -0.4
3,812,881 - AO356_16915 0.83 -1.3
3,812,881 - AO356_16915 0.83 +1.0
3,812,881 - AO356_16915 0.83 +0.6
3,812,881 - AO356_16915 0.83 +0.5
3,812,881 - AO356_16915 0.83 +0.2
3,812,881 - AO356_16915 0.83 +0.3
3,812,881 - AO356_16915 0.83 +0.4
3,812,881 - AO356_16915 0.83 +0.2
3,812,881 - AO356_16915 0.83 +0.3
3,812,881 - AO356_16915 0.83 -0.7
3,812,881 - AO356_16915 0.83 +0.7
3,812,881 - AO356_16915 0.83 +0.2
3,812,881 - AO356_16915 0.83 -0.5
3,812,881 - AO356_16915 0.83 +0.2
3,812,881 - AO356_16915 0.83 -0.2
3,812,881 - AO356_16915 0.83 -1.0
3,812,881 - AO356_16915 0.83 +1.8
3,812,900 + AO356_16915 0.85 +1.4
3,812,901 - AO356_16915 0.85 -0.2
3,812,901 - AO356_16915 0.85 -0.1
3,813,062 + -0.3
3,813,062 + -0.6
3,813,062 + +0.6
3,813,113 + +0.2
3,813,114 - +0.1
3,813,114 - +0.4
3,813,114 - -0.9
3,813,114 - -0.1
3,813,188 + -0.9
3,813,188 + -0.5
3,813,189 - -1.1
3,813,189 - +0.2
3,813,196 + +0.3
3,813,197 - -0.3
3,813,197 - +0.6
3,813,276 - AO356_16920 0.11 -0.5
3,813,734 + AO356_16920 0.62 -1.7
3,813,734 + AO356_16920 0.62 -0.7
3,813,735 - AO356_16920 0.62 +0.1
3,813,806 + AO356_16920 0.70 -0.5
3,813,824 + AO356_16920 0.72 +1.3
3,813,824 + AO356_16920 0.72 -0.7
3,813,825 - AO356_16920 0.72 -0.4
3,813,825 - AO356_16920 0.72 -1.4
3,813,863 + AO356_16920 0.76 -0.4
3,813,905 + AO356_16920 0.81 +1.1
3,813,905 + AO356_16920 0.81 -0.1
3,813,906 - AO356_16920 0.81 +0.2
3,814,078 + -1.0
3,814,078 + +1.4
3,814,078 + -0.9
3,814,078 + +0.4
3,814,078 + +0.1
3,814,078 + +0.8
3,814,078 + +0.5
3,814,079 - -1.1
3,814,079 - +1.2
3,814,079 - +2.5
3,814,079 - +0.4
3,814,079 - -0.6
3,814,079 - +0.2
3,814,079 - +0.8
3,814,079 - +1.0
3,814,079 - +0.9
3,814,080 + +0.3
3,814,080 + +0.2
3,814,080 + -0.3
3,814,080 + +1.4
3,814,080 + +0.2
3,814,080 + +0.8
3,814,080 + +0.7
3,814,080 + +0.5
3,814,080 + -0.4
3,814,080 + -0.1
3,814,080 + -0.0
3,814,080 + +0.3
3,814,080 + +0.2
3,814,080 + -0.8
3,814,080 + +0.6
3,814,081 - +1.2
3,814,081 - -0.5
3,814,081 - -0.1
3,814,081 - -0.1
3,814,081 - -0.2
3,814,081 - +0.9
3,814,081 - -0.1
3,814,081 - -0.6
3,814,081 - +0.6
3,814,081 - +0.5
3,814,094 - +1.1
3,814,148 + -1.3
3,814,148 + -0.3
3,814,148 + +0.2
3,814,149 - +0.2
3,814,149 - -0.2
3,814,149 - +0.1
3,814,149 - +0.7
3,814,149 - -2.1
3,814,149 - -0.3
3,814,321 + -0.8
3,814,322 - -0.0
3,814,322 - +0.6
3,814,441 - AO356_16925 0.19 +0.9
3,814,505 + AO356_16925 0.26 +0.7
3,814,707 + AO356_16925 0.46 +0.2
3,814,707 + AO356_16925 0.46 -1.2
3,814,708 - AO356_16925 0.47 +0.9
3,814,708 - AO356_16925 0.47 +0.3
3,814,711 + AO356_16925 0.47 +0.1
3,814,711 + AO356_16925 0.47 -0.6
3,814,711 + AO356_16925 0.47 -0.1
3,814,712 - AO356_16925 0.47 -0.9
3,814,799 + AO356_16925 0.56 -0.0
3,814,799 + AO356_16925 0.56 -0.2
3,814,799 + AO356_16925 0.56 +0.3
3,814,799 + AO356_16925 0.56 +0.3
3,814,799 + AO356_16925 0.56 +1.8
3,814,799 + AO356_16925 0.56 +0.7
3,814,799 + AO356_16925 0.56 +1.2
3,814,799 + AO356_16925 0.56 +0.8
3,814,799 + AO356_16925 0.56 -0.1
3,814,799 + AO356_16925 0.56 -2.7
3,814,800 - AO356_16925 0.56 +0.5
3,814,800 - AO356_16925 0.56 +0.2
3,814,800 - AO356_16925 0.56 -0.3
3,814,800 - AO356_16925 0.56 +0.7
3,814,800 - AO356_16925 0.56 +0.1
3,814,800 - AO356_16925 0.56 -1.5
3,814,800 - AO356_16925 0.56 +0.4
3,814,800 - AO356_16925 0.56 -0.2
3,814,977 + AO356_16925 0.74 -1.5
3,814,977 + AO356_16925 0.74 -1.1
3,814,977 + AO356_16925 0.74 -0.1
3,814,977 + AO356_16925 0.74 +0.8
3,814,989 + AO356_16925 0.75 +0.2
3,814,989 + AO356_16925 0.75 +0.5
3,814,989 + AO356_16925 0.75 +0.7
3,814,989 + AO356_16925 0.75 +0.5
3,814,989 + AO356_16925 0.75 +0.4
3,814,989 + AO356_16925 0.75 +0.7
3,814,989 + AO356_16925 0.75 +0.3
3,814,989 + AO356_16925 0.75 +0.2
3,814,989 + AO356_16925 0.75 -1.2
3,814,989 + AO356_16925 0.75 +0.1
3,814,990 - AO356_16925 0.76 +1.5
3,814,990 - AO356_16925 0.76 -0.7
3,814,990 - AO356_16925 0.76 +0.5
3,814,999 - AO356_16925 0.76 +0.7

Or see this region's nucleotide sequence