Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09370

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09365 and AO356_09370 are separated by 253 nucleotidesAO356_09370 and AO356_09375 are separated by 33 nucleotides AO356_09365: AO356_09365 - uroporphyrinogen decarboxylase, at 2,116,357 to 2,117,424 _09365 AO356_09370: AO356_09370 - glutamate synthase, at 2,117,678 to 2,119,096 _09370 AO356_09375: AO356_09375 - glutamate synthase, at 2,119,130 to 2,123,578 _09375 Position (kb) 2117 2118 2119 2120Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2117.500 kb on - strandat 2117.504 kb on - strandat 2117.534 kb on + strandat 2117.535 kb on - strandat 2117.535 kb on - strandat 2117.535 kb on - strandat 2117.691 kb on + strandat 2117.692 kb on - strandat 2117.692 kb on - strandat 2117.808 kb on + strandat 2117.808 kb on + strandat 2117.808 kb on + strandat 2117.809 kb on - strandat 2117.809 kb on - strandat 2117.809 kb on - strandat 2118.060 kb on + strand, within AO356_09370at 2118.060 kb on + strand, within AO356_09370at 2118.061 kb on - strand, within AO356_09370at 2118.316 kb on - strand, within AO356_09370at 2118.357 kb on + strand, within AO356_09370at 2118.357 kb on + strand, within AO356_09370at 2118.357 kb on + strand, within AO356_09370at 2118.357 kb on + strand, within AO356_09370at 2118.357 kb on + strand, within AO356_09370at 2118.357 kb on + strand, within AO356_09370at 2118.357 kb on + strand, within AO356_09370at 2118.357 kb on + strand, within AO356_09370at 2118.357 kb on + strand, within AO356_09370at 2118.357 kb on + strand, within AO356_09370at 2118.358 kb on - strand, within AO356_09370at 2118.358 kb on - strand, within AO356_09370at 2118.358 kb on - strand, within AO356_09370at 2118.358 kb on - strand, within AO356_09370at 2118.363 kb on + strand, within AO356_09370at 2118.363 kb on + strand, within AO356_09370at 2118.363 kb on + strand, within AO356_09370at 2118.363 kb on + strand, within AO356_09370at 2118.363 kb on + strand, within AO356_09370at 2118.363 kb on + strand, within AO356_09370at 2118.363 kb on + strand, within AO356_09370at 2118.363 kb on + strand, within AO356_09370at 2118.363 kb on + strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.364 kb on - strand, within AO356_09370at 2118.393 kb on + strand, within AO356_09370at 2118.394 kb on - strand, within AO356_09370at 2118.394 kb on - strand, within AO356_09370at 2118.591 kb on - strand, within AO356_09370at 2118.714 kb on + strand, within AO356_09370at 2118.714 kb on + strand, within AO356_09370at 2118.714 kb on + strand, within AO356_09370at 2118.714 kb on + strand, within AO356_09370at 2118.714 kb on + strand, within AO356_09370at 2118.714 kb on + strand, within AO356_09370at 2118.715 kb on - strand, within AO356_09370at 2118.715 kb on - strand, within AO356_09370at 2118.715 kb on - strand, within AO356_09370at 2118.715 kb on - strand, within AO356_09370at 2118.715 kb on - strand, within AO356_09370at 2118.715 kb on - strand, within AO356_09370at 2118.715 kb on - strand, within AO356_09370at 2118.715 kb on - strand, within AO356_09370at 2119.101 kb on - strandat 2119.101 kb on - strandat 2119.101 kb on - strandat 2119.101 kb on - strandat 2119.212 kb on + strandat 2119.212 kb on + strandat 2119.212 kb on + strandat 2119.213 kb on - strandat 2119.213 kb on - strandat 2119.269 kb on + strandat 2119.270 kb on - strandat 2119.270 kb on - strandat 2119.270 kb on - strandat 2119.302 kb on + strandat 2119.392 kb on + strandat 2119.393 kb on - strandat 2119.393 kb on - strandat 2119.393 kb on - strandat 2119.393 kb on - strandat 2119.426 kb on + strandat 2119.426 kb on + strandat 2119.426 kb on + strandat 2119.427 kb on - strandat 2119.427 kb on - strandat 2119.427 kb on - strandat 2119.428 kb on + strandat 2119.428 kb on + strandat 2119.439 kb on - strandat 2119.470 kb on + strandat 2119.470 kb on + strandat 2119.471 kb on - strandat 2119.471 kb on - strandat 2119.522 kb on + strandat 2119.522 kb on + strandat 2119.522 kb on + strandat 2119.584 kb on + strand, within AO356_09375at 2119.626 kb on + strand, within AO356_09375at 2119.626 kb on + strand, within AO356_09375at 2119.626 kb on + strand, within AO356_09375at 2119.626 kb on + strand, within AO356_09375at 2119.627 kb on - strand, within AO356_09375at 2119.627 kb on - strand, within AO356_09375at 2119.627 kb on - strand, within AO356_09375at 2119.687 kb on - strand, within AO356_09375at 2119.710 kb on + strand, within AO356_09375at 2119.710 kb on + strand, within AO356_09375at 2119.710 kb on + strand, within AO356_09375at 2119.710 kb on + strand, within AO356_09375at 2119.710 kb on + strand, within AO356_09375at 2119.710 kb on + strand, within AO356_09375at 2119.710 kb on + strand, within AO356_09375at 2119.711 kb on - strand, within AO356_09375at 2119.711 kb on - strand, within AO356_09375at 2119.711 kb on - strand, within AO356_09375at 2119.868 kb on - strand, within AO356_09375

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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2,117,500 - +0.6
2,117,504 - +0.4
2,117,534 + +0.2
2,117,535 - +0.3
2,117,535 - +0.7
2,117,535 - +0.2
2,117,691 + -1.8
2,117,692 - -1.8
2,117,692 - -3.0
2,117,808 + -1.5
2,117,808 + -2.1
2,117,808 + -2.3
2,117,809 - -1.6
2,117,809 - -1.3
2,117,809 - +0.7
2,118,060 + AO356_09370 0.27 -2.3
2,118,060 + AO356_09370 0.27 -1.2
2,118,061 - AO356_09370 0.27 -1.4
2,118,316 - AO356_09370 0.45 -3.5
2,118,357 + AO356_09370 0.48 -1.6
2,118,357 + AO356_09370 0.48 -1.0
2,118,357 + AO356_09370 0.48 -3.2
2,118,357 + AO356_09370 0.48 -1.3
2,118,357 + AO356_09370 0.48 -1.8
2,118,357 + AO356_09370 0.48 -2.8
2,118,357 + AO356_09370 0.48 +1.5
2,118,357 + AO356_09370 0.48 -1.8
2,118,357 + AO356_09370 0.48 -3.1
2,118,357 + AO356_09370 0.48 -2.6
2,118,358 - AO356_09370 0.48 -0.3
2,118,358 - AO356_09370 0.48 -2.3
2,118,358 - AO356_09370 0.48 +0.2
2,118,358 - AO356_09370 0.48 -1.9
2,118,363 + AO356_09370 0.48 -2.9
2,118,363 + AO356_09370 0.48 -2.1
2,118,363 + AO356_09370 0.48 -1.3
2,118,363 + AO356_09370 0.48 -1.7
2,118,363 + AO356_09370 0.48 -1.8
2,118,363 + AO356_09370 0.48 -3.7
2,118,363 + AO356_09370 0.48 -1.9
2,118,363 + AO356_09370 0.48 -1.1
2,118,363 + AO356_09370 0.48 -1.1
2,118,364 - AO356_09370 0.48 -3.2
2,118,364 - AO356_09370 0.48 -1.7
2,118,364 - AO356_09370 0.48 -1.9
2,118,364 - AO356_09370 0.48 -2.4
2,118,364 - AO356_09370 0.48 -2.4
2,118,364 - AO356_09370 0.48 -2.9
2,118,364 - AO356_09370 0.48 -2.0
2,118,364 - AO356_09370 0.48 -0.1
2,118,364 - AO356_09370 0.48 -3.4
2,118,364 - AO356_09370 0.48 -2.8
2,118,364 - AO356_09370 0.48 -3.3
2,118,393 + AO356_09370 0.50 -0.3
2,118,394 - AO356_09370 0.50 -1.7
2,118,394 - AO356_09370 0.50 -3.2
2,118,591 - AO356_09370 0.64 -2.8
2,118,714 + AO356_09370 0.73 -1.7
2,118,714 + AO356_09370 0.73 -2.5
2,118,714 + AO356_09370 0.73 -0.7
2,118,714 + AO356_09370 0.73 -2.8
2,118,714 + AO356_09370 0.73 -1.9
2,118,714 + AO356_09370 0.73 +0.2
2,118,715 - AO356_09370 0.73 -2.1
2,118,715 - AO356_09370 0.73 -2.2
2,118,715 - AO356_09370 0.73 -1.0
2,118,715 - AO356_09370 0.73 -1.5
2,118,715 - AO356_09370 0.73 -2.8
2,118,715 - AO356_09370 0.73 -2.0
2,118,715 - AO356_09370 0.73 -2.2
2,118,715 - AO356_09370 0.73 -2.0
2,119,101 - -2.9
2,119,101 - -3.5
2,119,101 - -1.0
2,119,101 - -2.5
2,119,212 + -2.6
2,119,212 + -2.1
2,119,212 + -3.8
2,119,213 - -2.2
2,119,213 - -2.4
2,119,269 + -1.0
2,119,270 - -3.1
2,119,270 - -1.2
2,119,270 - -1.0
2,119,302 + -2.4
2,119,392 + -2.2
2,119,393 - -1.4
2,119,393 - -1.6
2,119,393 - -1.0
2,119,393 - -1.5
2,119,426 + -3.1
2,119,426 + -1.6
2,119,426 + -1.7
2,119,427 - -3.4
2,119,427 - -0.7
2,119,427 - -2.8
2,119,428 + -2.2
2,119,428 + -1.0
2,119,439 - -2.1
2,119,470 + -2.9
2,119,470 + -0.8
2,119,471 - -2.3
2,119,471 - -2.3
2,119,522 + -0.6
2,119,522 + +0.4
2,119,522 + -2.3
2,119,584 + AO356_09375 0.10 -3.2
2,119,626 + AO356_09375 0.11 -1.4
2,119,626 + AO356_09375 0.11 -1.3
2,119,626 + AO356_09375 0.11 -1.6
2,119,626 + AO356_09375 0.11 -2.6
2,119,627 - AO356_09375 0.11 -2.1
2,119,627 - AO356_09375 0.11 -2.5
2,119,627 - AO356_09375 0.11 -3.0
2,119,687 - AO356_09375 0.13 -2.6
2,119,710 + AO356_09375 0.13 -1.8
2,119,710 + AO356_09375 0.13 -1.0
2,119,710 + AO356_09375 0.13 -2.9
2,119,710 + AO356_09375 0.13 -2.6
2,119,710 + AO356_09375 0.13 -2.1
2,119,710 + AO356_09375 0.13 -2.7
2,119,710 + AO356_09375 0.13 -2.1
2,119,711 - AO356_09375 0.13 -2.7
2,119,711 - AO356_09375 0.13 -1.9
2,119,711 - AO356_09375 0.13 -2.1
2,119,868 - AO356_09375 0.17 -2.2

Or see this region's nucleotide sequence