Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07775

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07770 and AO356_07775 are separated by 67 nucleotidesAO356_07775 and AO356_07780 are separated by 123 nucleotides AO356_07770: AO356_07770 - toxin, at 1,735,160 to 1,737,958 _07770 AO356_07775: AO356_07775 - glyoxalase, at 1,738,026 to 1,738,394 _07775 AO356_07780: AO356_07780 - D-aminoacylase, at 1,738,518 to 1,739,990 _07780 Position (kb) 1738 1739Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1737.080 kb on + strand, within AO356_07770at 1737.080 kb on + strand, within AO356_07770at 1737.081 kb on - strand, within AO356_07770at 1737.081 kb on - strand, within AO356_07770at 1737.081 kb on - strand, within AO356_07770at 1737.217 kb on + strand, within AO356_07770at 1737.356 kb on + strand, within AO356_07770at 1737.373 kb on + strand, within AO356_07770at 1737.402 kb on + strand, within AO356_07770at 1737.413 kb on + strand, within AO356_07770at 1737.414 kb on - strand, within AO356_07770at 1737.414 kb on - strand, within AO356_07770at 1737.414 kb on - strand, within AO356_07770at 1737.414 kb on - strand, within AO356_07770at 1737.443 kb on + strand, within AO356_07770at 1737.443 kb on + strand, within AO356_07770at 1737.443 kb on + strand, within AO356_07770at 1737.461 kb on + strand, within AO356_07770at 1737.461 kb on + strand, within AO356_07770at 1737.461 kb on + strand, within AO356_07770at 1737.462 kb on - strand, within AO356_07770at 1737.462 kb on - strand, within AO356_07770at 1737.462 kb on - strand, within AO356_07770at 1737.462 kb on - strand, within AO356_07770at 1737.476 kb on - strand, within AO356_07770at 1737.485 kb on + strand, within AO356_07770at 1737.485 kb on + strand, within AO356_07770at 1737.486 kb on - strand, within AO356_07770at 1737.486 kb on - strand, within AO356_07770at 1737.486 kb on - strand, within AO356_07770at 1737.510 kb on - strand, within AO356_07770at 1737.539 kb on - strand, within AO356_07770at 1737.539 kb on - strand, within AO356_07770at 1737.564 kb on + strand, within AO356_07770at 1737.564 kb on + strand, within AO356_07770at 1737.564 kb on + strand, within AO356_07770at 1737.564 kb on + strand, within AO356_07770at 1737.564 kb on + strand, within AO356_07770at 1737.565 kb on - strand, within AO356_07770at 1737.620 kb on + strand, within AO356_07770at 1737.620 kb on + strand, within AO356_07770at 1737.620 kb on + strand, within AO356_07770at 1737.621 kb on - strand, within AO356_07770at 1737.621 kb on - strand, within AO356_07770at 1737.621 kb on - strand, within AO356_07770at 1737.621 kb on - strand, within AO356_07770at 1737.621 kb on - strand, within AO356_07770at 1737.661 kb on + strand, within AO356_07770at 1737.662 kb on - strand, within AO356_07770at 1737.662 kb on - strand, within AO356_07770at 1737.662 kb on - strand, within AO356_07770at 1737.902 kb on + strandat 1737.902 kb on + strandat 1737.903 kb on - strandat 1737.903 kb on - strandat 1737.903 kb on - strandat 1737.903 kb on - strandat 1737.903 kb on - strandat 1737.903 kb on - strandat 1737.922 kb on + strandat 1738.046 kb on + strandat 1738.047 kb on - strandat 1738.047 kb on - strandat 1738.267 kb on + strand, within AO356_07775at 1738.268 kb on - strand, within AO356_07775at 1738.268 kb on - strand, within AO356_07775at 1738.330 kb on + strand, within AO356_07775at 1738.330 kb on + strand, within AO356_07775at 1738.330 kb on + strand, within AO356_07775at 1738.330 kb on + strand, within AO356_07775at 1738.331 kb on - strand, within AO356_07775at 1738.331 kb on - strand, within AO356_07775at 1738.425 kb on + strandat 1738.468 kb on + strandat 1738.501 kb on + strandat 1738.508 kb on + strandat 1738.508 kb on + strandat 1738.508 kb on + strandat 1738.508 kb on + strandat 1738.508 kb on + strandat 1738.508 kb on + strandat 1738.508 kb on + strandat 1738.508 kb on + strandat 1738.509 kb on - strandat 1738.509 kb on - strandat 1738.509 kb on - strandat 1738.943 kb on + strand, within AO356_07780at 1738.944 kb on - strand, within AO356_07780at 1738.969 kb on + strand, within AO356_07780at 1738.972 kb on + strand, within AO356_07780at 1738.972 kb on + strand, within AO356_07780at 1738.973 kb on - strand, within AO356_07780at 1738.973 kb on - strand, within AO356_07780at 1738.973 kb on - strand, within AO356_07780at 1739.231 kb on + strand, within AO356_07780at 1739.353 kb on + strand, within AO356_07780at 1739.353 kb on + strand, within AO356_07780at 1739.353 kb on + strand, within AO356_07780at 1739.354 kb on - strand, within AO356_07780

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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1,737,080 + AO356_07770 0.69 -0.3
1,737,080 + AO356_07770 0.69 +1.1
1,737,081 - AO356_07770 0.69 -1.0
1,737,081 - AO356_07770 0.69 +0.0
1,737,081 - AO356_07770 0.69 +1.3
1,737,217 + AO356_07770 0.73 +0.2
1,737,356 + AO356_07770 0.78 -1.4
1,737,373 + AO356_07770 0.79 -0.3
1,737,402 + AO356_07770 0.80 -1.6
1,737,413 + AO356_07770 0.80 +0.7
1,737,414 - AO356_07770 0.81 +1.0
1,737,414 - AO356_07770 0.81 -0.3
1,737,414 - AO356_07770 0.81 +0.0
1,737,414 - AO356_07770 0.81 -0.3
1,737,443 + AO356_07770 0.82 +0.5
1,737,443 + AO356_07770 0.82 -1.0
1,737,443 + AO356_07770 0.82 +0.7
1,737,461 + AO356_07770 0.82 -0.4
1,737,461 + AO356_07770 0.82 -0.5
1,737,461 + AO356_07770 0.82 +0.6
1,737,462 - AO356_07770 0.82 -0.1
1,737,462 - AO356_07770 0.82 +0.8
1,737,462 - AO356_07770 0.82 -0.9
1,737,462 - AO356_07770 0.82 +0.5
1,737,476 - AO356_07770 0.83 -2.5
1,737,485 + AO356_07770 0.83 +1.6
1,737,485 + AO356_07770 0.83 -0.0
1,737,486 - AO356_07770 0.83 -0.6
1,737,486 - AO356_07770 0.83 -0.3
1,737,486 - AO356_07770 0.83 +0.7
1,737,510 - AO356_07770 0.84 -2.8
1,737,539 - AO356_07770 0.85 -0.9
1,737,539 - AO356_07770 0.85 +0.2
1,737,564 + AO356_07770 0.86 +0.1
1,737,564 + AO356_07770 0.86 +0.4
1,737,564 + AO356_07770 0.86 +0.0
1,737,564 + AO356_07770 0.86 -0.6
1,737,564 + AO356_07770 0.86 +0.3
1,737,565 - AO356_07770 0.86 -0.2
1,737,620 + AO356_07770 0.88 +1.2
1,737,620 + AO356_07770 0.88 +0.3
1,737,620 + AO356_07770 0.88 +0.8
1,737,621 - AO356_07770 0.88 +0.0
1,737,621 - AO356_07770 0.88 +0.4
1,737,621 - AO356_07770 0.88 +0.6
1,737,621 - AO356_07770 0.88 +0.3
1,737,621 - AO356_07770 0.88 +0.4
1,737,661 + AO356_07770 0.89 +0.9
1,737,662 - AO356_07770 0.89 +0.0
1,737,662 - AO356_07770 0.89 -0.9
1,737,662 - AO356_07770 0.89 +1.0
1,737,902 + +0.9
1,737,902 + +0.3
1,737,903 - -0.7
1,737,903 - +0.1
1,737,903 - -1.4
1,737,903 - +0.4
1,737,903 - +0.1
1,737,903 - -1.1
1,737,922 + +0.0
1,738,046 + -0.4
1,738,047 - +0.0
1,738,047 - +0.4
1,738,267 + AO356_07775 0.65 -0.1
1,738,268 - AO356_07775 0.66 +1.0
1,738,268 - AO356_07775 0.66 -0.4
1,738,330 + AO356_07775 0.82 +1.3
1,738,330 + AO356_07775 0.82 +0.1
1,738,330 + AO356_07775 0.82 +0.5
1,738,330 + AO356_07775 0.82 -0.2
1,738,331 - AO356_07775 0.83 +0.0
1,738,331 - AO356_07775 0.83 +0.6
1,738,425 + -0.2
1,738,468 + -1.0
1,738,501 + -0.4
1,738,508 + -1.2
1,738,508 + -0.2
1,738,508 + +0.2
1,738,508 + -1.2
1,738,508 + +0.7
1,738,508 + -0.4
1,738,508 + +0.5
1,738,508 + -1.2
1,738,509 - +0.0
1,738,509 - +0.0
1,738,509 - +0.1
1,738,943 + AO356_07780 0.29 +0.7
1,738,944 - AO356_07780 0.29 -0.1
1,738,969 + AO356_07780 0.31 -1.3
1,738,972 + AO356_07780 0.31 +0.6
1,738,972 + AO356_07780 0.31 -2.3
1,738,973 - AO356_07780 0.31 +0.8
1,738,973 - AO356_07780 0.31 -0.1
1,738,973 - AO356_07780 0.31 +0.5
1,739,231 + AO356_07780 0.48 +2.1
1,739,353 + AO356_07780 0.57 -1.5
1,739,353 + AO356_07780 0.57 +1.1
1,739,353 + AO356_07780 0.57 -0.4
1,739,354 - AO356_07780 0.57 +0.3

Or see this region's nucleotide sequence