Experiment: D-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04110 and AO356_04115 are separated by 476 nucleotides AO356_04115 and AO356_04120 are separated by 103 nucleotides
AO356_04110: AO356_04110 - sodium:solute symporter, at 924,279 to 925,667
_04110
AO356_04115: AO356_04115 - LysR family transcriptional regulator, at 926,144 to 927,037
_04115
AO356_04120: AO356_04120 - hypothetical protein, at 927,141 to 928,313
_04120
Position (kb) 926
927
928 Strain fitness (log2 ratio) -2
-1
0
1
2 at 925.425 kb on + strand, within AO356_04110 at 925.426 kb on - strand, within AO356_04110 at 925.426 kb on - strand, within AO356_04110 at 925.474 kb on - strand, within AO356_04110 at 925.582 kb on - strand at 925.582 kb on - strand at 925.582 kb on - strand at 925.584 kb on + strand at 925.584 kb on + strand at 925.584 kb on + strand at 925.585 kb on - strand at 925.726 kb on + strand at 925.727 kb on - strand at 925.727 kb on - strand at 925.753 kb on + strand at 925.753 kb on + strand at 925.873 kb on + strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.878 kb on - strand at 926.062 kb on + strand at 926.063 kb on - strand at 926.063 kb on - strand at 926.065 kb on + strand at 926.065 kb on + strand at 926.066 kb on - strand at 926.078 kb on + strand at 926.078 kb on + strand at 926.079 kb on - strand at 926.112 kb on + strand at 926.113 kb on - strand at 926.113 kb on - strand at 926.386 kb on - strand, within AO356_04115 at 926.445 kb on - strand, within AO356_04115 at 926.706 kb on + strand, within AO356_04115 at 926.706 kb on + strand, within AO356_04115 at 926.707 kb on - strand, within AO356_04115 at 926.707 kb on - strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.749 kb on - strand, within AO356_04115 at 926.749 kb on - strand, within AO356_04115 at 927.103 kb on - strand at 927.151 kb on + strand at 927.152 kb on - strand at 927.152 kb on - strand at 927.226 kb on + strand at 927.291 kb on + strand, within AO356_04120 at 927.292 kb on - strand, within AO356_04120 at 927.292 kb on - strand, within AO356_04120 at 927.292 kb on - strand, within AO356_04120 at 927.300 kb on + strand, within AO356_04120 at 927.300 kb on + strand, within AO356_04120 at 927.301 kb on - strand, within AO356_04120 at 927.639 kb on + strand, within AO356_04120 at 927.639 kb on + strand, within AO356_04120 at 927.639 kb on + strand, within AO356_04120 at 927.640 kb on - strand, within AO356_04120 at 927.640 kb on - strand, within AO356_04120 at 927.768 kb on + strand, within AO356_04120 at 927.769 kb on - strand, within AO356_04120 at 927.769 kb on - strand, within AO356_04120 at 927.769 kb on - strand, within AO356_04120 at 927.769 kb on - strand, within AO356_04120 at 927.790 kb on - strand, within AO356_04120 at 927.790 kb on - strand, within AO356_04120 at 927.790 kb on - strand, within AO356_04120 at 927.899 kb on - strand, within AO356_04120 at 927.982 kb on + strand, within AO356_04120 at 927.983 kb on - strand, within AO356_04120
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (N) remove 925,425 + AO356_04110 0.83 +0.1 925,426 - AO356_04110 0.83 +0.3 925,426 - AO356_04110 0.83 +0.9 925,474 - AO356_04110 0.86 -0.3 925,582 - +0.0 925,582 - -0.7 925,582 - +0.7 925,584 + +0.6 925,584 + +0.1 925,584 + +0.5 925,585 - +0.3 925,726 + -0.3 925,727 - +0.9 925,727 - -0.5 925,753 + +1.3 925,753 + +0.1 925,873 + +0.7 925,874 - -0.9 925,874 - -0.3 925,874 - +0.5 925,874 - +0.0 925,874 - -2.0 925,874 - +0.3 925,874 - -0.5 925,874 - +0.5 925,874 - +0.4 925,874 - +0.0 925,874 - -0.7 925,874 - +0.3 925,874 - -1.5 925,874 - +0.3 925,874 - -2.6 925,878 - +0.6 926,062 + -1.7 926,063 - +0.2 926,063 - +0.1 926,065 + -0.1 926,065 + +0.3 926,066 - +1.7 926,078 + +1.4 926,078 + +0.0 926,079 - -0.4 926,112 + +0.6 926,113 - +0.9 926,113 - +0.5 926,386 - AO356_04115 0.27 -0.6 926,445 - AO356_04115 0.34 +0.4 926,706 + AO356_04115 0.63 -0.5 926,706 + AO356_04115 0.63 +1.4 926,707 - AO356_04115 0.63 -0.1 926,707 - AO356_04115 0.63 -1.7 926,748 + AO356_04115 0.68 +0.1 926,748 + AO356_04115 0.68 +0.4 926,748 + AO356_04115 0.68 +0.4 926,748 + AO356_04115 0.68 +0.7 926,748 + AO356_04115 0.68 -0.2 926,748 + AO356_04115 0.68 -1.3 926,748 + AO356_04115 0.68 -0.3 926,749 - AO356_04115 0.68 +1.2 926,749 - AO356_04115 0.68 -0.4 927,103 - +0.5 927,151 + -0.4 927,152 - +0.2 927,152 - +2.1 927,226 + -1.2 927,291 + AO356_04120 0.13 -0.3 927,292 - AO356_04120 0.13 +0.7 927,292 - AO356_04120 0.13 +0.6 927,292 - AO356_04120 0.13 -0.3 927,300 + AO356_04120 0.14 +0.8 927,300 + AO356_04120 0.14 +0.7 927,301 - AO356_04120 0.14 -0.4 927,639 + AO356_04120 0.42 -1.2 927,639 + AO356_04120 0.42 +0.4 927,639 + AO356_04120 0.42 +0.4 927,640 - AO356_04120 0.43 +0.1 927,640 - AO356_04120 0.43 +0.2 927,768 + AO356_04120 0.53 +0.6 927,769 - AO356_04120 0.54 -0.9 927,769 - AO356_04120 0.54 -0.4 927,769 - AO356_04120 0.54 +0.6 927,769 - AO356_04120 0.54 -0.1 927,790 - AO356_04120 0.55 +0.4 927,790 - AO356_04120 0.55 -0.5 927,790 - AO356_04120 0.55 +0.3 927,899 - AO356_04120 0.65 +0.2 927,982 + AO356_04120 0.72 -0.9 927,983 - AO356_04120 0.72 -0.5
Or see this region's nucleotide sequence