Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01270

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01260 and AO356_01265 are separated by 135 nucleotidesAO356_01265 and AO356_01270 are separated by 299 nucleotidesAO356_01270 and AO356_01275 are separated by 182 nucleotides AO356_01260: AO356_01260 - methyltransferase, at 294,106 to 294,612 _01260 AO356_01265: AO356_01265 - hypothetical protein, at 294,748 to 294,984 _01265 AO356_01270: AO356_01270 - (Fe-S)-binding protein, at 295,284 to 296,696 _01270 AO356_01275: AO356_01275 - GntR family transcriptional regulator, at 296,879 to 298,306 _01275 Position (kb) 295 296 297Strain fitness (log2 ratio) -2 -1 0 1 2at 294.355 kb on + strand, within AO356_01260at 294.355 kb on + strand, within AO356_01260at 294.355 kb on + strand, within AO356_01260at 294.356 kb on - strand, within AO356_01260at 294.356 kb on - strand, within AO356_01260at 294.356 kb on - strand, within AO356_01260at 294.406 kb on + strand, within AO356_01260at 294.637 kb on - strandat 294.718 kb on - strandat 294.718 kb on - strandat 294.889 kb on + strand, within AO356_01265at 294.889 kb on + strand, within AO356_01265at 294.889 kb on + strand, within AO356_01265at 294.889 kb on + strand, within AO356_01265at 294.890 kb on - strand, within AO356_01265at 294.890 kb on - strand, within AO356_01265at 294.890 kb on - strand, within AO356_01265at 294.890 kb on - strand, within AO356_01265at 294.892 kb on - strand, within AO356_01265at 295.016 kb on - strandat 295.016 kb on - strandat 295.016 kb on - strandat 295.108 kb on + strandat 295.108 kb on + strandat 295.245 kb on + strandat 295.262 kb on - strandat 295.262 kb on - strandat 295.262 kb on - strandat 295.292 kb on + strandat 295.292 kb on + strandat 295.293 kb on - strandat 295.293 kb on - strandat 295.293 kb on - strandat 295.293 kb on - strandat 295.293 kb on - strandat 295.312 kb on + strandat 295.312 kb on + strandat 295.312 kb on + strandat 295.815 kb on + strand, within AO356_01270at 295.815 kb on + strand, within AO356_01270at 295.888 kb on + strand, within AO356_01270at 295.963 kb on - strand, within AO356_01270at 296.013 kb on + strand, within AO356_01270at 296.013 kb on + strand, within AO356_01270at 296.013 kb on + strand, within AO356_01270at 296.014 kb on - strand, within AO356_01270at 296.072 kb on + strand, within AO356_01270at 296.218 kb on - strand, within AO356_01270at 296.239 kb on - strand, within AO356_01270at 296.239 kb on - strand, within AO356_01270at 296.239 kb on - strand, within AO356_01270at 296.239 kb on - strand, within AO356_01270at 296.301 kb on + strand, within AO356_01270at 296.302 kb on - strand, within AO356_01270at 296.433 kb on + strand, within AO356_01270at 296.433 kb on + strand, within AO356_01270at 296.434 kb on - strand, within AO356_01270at 296.434 kb on - strand, within AO356_01270at 296.434 kb on - strand, within AO356_01270at 296.475 kb on + strand, within AO356_01270at 296.475 kb on + strand, within AO356_01270at 296.652 kb on + strandat 296.652 kb on + strandat 296.653 kb on - strandat 296.702 kb on + strandat 296.702 kb on + strandat 296.702 kb on + strandat 296.703 kb on - strandat 296.775 kb on + strandat 296.775 kb on + strandat 296.985 kb on - strandat 296.985 kb on - strandat 296.985 kb on - strandat 297.017 kb on + strandat 297.017 kb on + strandat 297.017 kb on + strandat 297.017 kb on + strandat 297.018 kb on - strandat 297.020 kb on + strandat 297.020 kb on + strandat 297.021 kb on - strandat 297.021 kb on - strandat 297.356 kb on + strand, within AO356_01275at 297.356 kb on + strand, within AO356_01275at 297.356 kb on + strand, within AO356_01275at 297.488 kb on + strand, within AO356_01275at 297.488 kb on + strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.489 kb on - strand, within AO356_01275at 297.560 kb on - strand, within AO356_01275at 297.573 kb on + strand, within AO356_01275

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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294,355 + AO356_01260 0.49 -0.5
294,355 + AO356_01260 0.49 -1.6
294,355 + AO356_01260 0.49 -0.1
294,356 - AO356_01260 0.49 -0.9
294,356 - AO356_01260 0.49 -0.4
294,356 - AO356_01260 0.49 +1.1
294,406 + AO356_01260 0.59 +0.4
294,637 - +0.9
294,718 - -0.3
294,718 - -0.6
294,889 + AO356_01265 0.59 +0.2
294,889 + AO356_01265 0.59 -1.3
294,889 + AO356_01265 0.59 +1.2
294,889 + AO356_01265 0.59 +0.8
294,890 - AO356_01265 0.60 +0.3
294,890 - AO356_01265 0.60 +0.3
294,890 - AO356_01265 0.60 -0.6
294,890 - AO356_01265 0.60 -0.6
294,892 - AO356_01265 0.61 -0.2
295,016 - -1.0
295,016 - -0.7
295,016 - -0.3
295,108 + -0.0
295,108 + -0.4
295,245 + +0.0
295,262 - -0.6
295,262 - -0.5
295,262 - +0.9
295,292 + -0.1
295,292 + -1.2
295,293 - +0.4
295,293 - +1.3
295,293 - +0.1
295,293 - +1.5
295,293 - -0.8
295,312 + -0.5
295,312 + -0.6
295,312 + -1.3
295,815 + AO356_01270 0.38 -0.5
295,815 + AO356_01270 0.38 +1.4
295,888 + AO356_01270 0.43 -0.6
295,963 - AO356_01270 0.48 -2.2
296,013 + AO356_01270 0.52 -0.9
296,013 + AO356_01270 0.52 +0.2
296,013 + AO356_01270 0.52 +0.7
296,014 - AO356_01270 0.52 -0.1
296,072 + AO356_01270 0.56 +0.4
296,218 - AO356_01270 0.66 +0.9
296,239 - AO356_01270 0.68 +1.5
296,239 - AO356_01270 0.68 +0.1
296,239 - AO356_01270 0.68 -0.5
296,239 - AO356_01270 0.68 -0.7
296,301 + AO356_01270 0.72 -0.2
296,302 - AO356_01270 0.72 +0.9
296,433 + AO356_01270 0.81 +0.2
296,433 + AO356_01270 0.81 +0.7
296,434 - AO356_01270 0.81 -0.1
296,434 - AO356_01270 0.81 -1.6
296,434 - AO356_01270 0.81 +0.6
296,475 + AO356_01270 0.84 +0.4
296,475 + AO356_01270 0.84 +0.2
296,652 + +0.4
296,652 + +0.4
296,653 - -0.7
296,702 + -0.4
296,702 + +0.6
296,702 + -0.2
296,703 - +0.9
296,775 + +0.0
296,775 + +0.4
296,985 - -0.8
296,985 - +0.0
296,985 - +0.7
297,017 + +2.0
297,017 + -0.6
297,017 + +0.1
297,017 + +1.3
297,018 - -0.2
297,020 + +0.4
297,020 + +0.4
297,021 - -1.4
297,021 - +1.0
297,356 + AO356_01275 0.33 +0.6
297,356 + AO356_01275 0.33 +1.2
297,356 + AO356_01275 0.33 +0.1
297,488 + AO356_01275 0.43 +1.2
297,488 + AO356_01275 0.43 +0.0
297,489 - AO356_01275 0.43 +0.1
297,489 - AO356_01275 0.43 -0.2
297,489 - AO356_01275 0.43 +0.2
297,489 - AO356_01275 0.43 +0.1
297,489 - AO356_01275 0.43 +0.2
297,489 - AO356_01275 0.43 +1.0
297,560 - AO356_01275 0.48 +0.8
297,573 + AO356_01275 0.49 +0.4

Or see this region's nucleotide sequence