Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3745

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3744 and Dshi_3745 overlap by 4 nucleotidesDshi_3745 and Dshi_3746 are separated by 239 nucleotidesDshi_3746 and Dshi_3747 are separated by 306 nucleotides Dshi_3744: Dshi_3744 - RC101 (RefSeq), at 150,613 to 151,635 _3744 Dshi_3745: Dshi_3745 - RC102 (RefSeq), at 151,632 to 152,987 _3745 Dshi_3746: Dshi_3746 - hypothetical protein (RefSeq), at 153,227 to 153,460 _3746 Dshi_3747: Dshi_3747 - hypothetical protein (RefSeq), at 153,767 to 154,930 _3747 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1 2 3at 151.460 kb on + strand, within Dshi_3744at 152.380 kb on - strand, within Dshi_3745at 153.218 kb on + strandat 153.298 kb on + strand, within Dshi_3746at 153.409 kb on - strand, within Dshi_3746at 153.443 kb on + strandat 153.516 kb on + strandat 153.538 kb on + strandat 153.611 kb on - strandat 153.738 kb on - strandat 153.772 kb on - strandat 153.772 kb on - strandat 153.774 kb on + strandat 153.881 kb on - strandat 153.881 kb on - strandat 153.927 kb on - strand, within Dshi_3747

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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151,460 + Dshi_3744 0.83 +2.5
152,380 - Dshi_3745 0.55 -2.3
153,218 + -1.8
153,298 + Dshi_3746 0.30 -0.6
153,409 - Dshi_3746 0.78 +2.9
153,443 + -0.7
153,516 + +0.2
153,538 + -0.6
153,611 - +0.7
153,738 - +0.2
153,772 - -0.3
153,772 - -0.5
153,774 + +2.0
153,881 - +0.5
153,881 - +0.8
153,927 - Dshi_3747 0.14 +0.5

Or see this region's nucleotide sequence