Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3723

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3722 and Dshi_3723 are separated by 26 nucleotidesDshi_3723 and Dshi_3724 are separated by 41 nucleotides Dshi_3722: Dshi_3722 - AMP-dependent synthetase and ligase (RefSeq), at 128,919 to 130,454 _3722 Dshi_3723: Dshi_3723 - Enoyl-CoA hydratase/isomerase (RefSeq), at 130,481 to 131,284 _3723 Dshi_3724: Dshi_3724 - Extracellular ligand-binding receptor (RefSeq), at 131,326 to 132,480 _3724 Position (kb) 130 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 129.486 kb on - strand, within Dshi_3722at 129.535 kb on + strand, within Dshi_3722at 129.565 kb on - strand, within Dshi_3722at 129.583 kb on + strand, within Dshi_3722at 129.616 kb on + strand, within Dshi_3722at 129.631 kb on + strand, within Dshi_3722at 129.657 kb on - strand, within Dshi_3722at 129.673 kb on + strand, within Dshi_3722at 129.673 kb on + strand, within Dshi_3722at 129.677 kb on + strand, within Dshi_3722at 129.681 kb on - strand, within Dshi_3722at 129.681 kb on - strand, within Dshi_3722at 129.690 kb on + strand, within Dshi_3722at 129.698 kb on - strand, within Dshi_3722at 129.729 kb on + strand, within Dshi_3722at 129.737 kb on - strand, within Dshi_3722at 129.767 kb on + strand, within Dshi_3722at 129.776 kb on + strand, within Dshi_3722at 129.780 kb on - strand, within Dshi_3722at 129.830 kb on + strand, within Dshi_3722at 129.831 kb on + strand, within Dshi_3722at 129.839 kb on - strand, within Dshi_3722at 129.915 kb on + strand, within Dshi_3722at 129.915 kb on + strand, within Dshi_3722at 129.919 kb on + strand, within Dshi_3722at 129.966 kb on + strand, within Dshi_3722at 130.008 kb on - strand, within Dshi_3722at 130.016 kb on - strand, within Dshi_3722at 130.021 kb on + strand, within Dshi_3722at 130.089 kb on + strand, within Dshi_3722at 130.111 kb on - strand, within Dshi_3722at 130.130 kb on + strand, within Dshi_3722at 130.197 kb on + strand, within Dshi_3722at 130.213 kb on + strand, within Dshi_3722at 130.220 kb on - strand, within Dshi_3722at 130.221 kb on - strand, within Dshi_3722at 130.223 kb on + strand, within Dshi_3722at 130.235 kb on - strand, within Dshi_3722at 130.235 kb on - strand, within Dshi_3722at 130.275 kb on + strand, within Dshi_3722at 130.276 kb on - strand, within Dshi_3722at 130.283 kb on + strand, within Dshi_3722at 130.285 kb on + strand, within Dshi_3722at 130.285 kb on + strand, within Dshi_3722at 130.293 kb on - strand, within Dshi_3722at 130.293 kb on - strand, within Dshi_3722at 130.365 kb on - strandat 130.423 kb on + strandat 130.425 kb on + strandat 130.425 kb on + strandat 130.437 kb on - strandat 130.437 kb on - strandat 130.439 kb on - strandat 130.449 kb on + strandat 130.449 kb on + strandat 130.457 kb on - strandat 130.457 kb on - strandat 130.457 kb on - strandat 130.460 kb on + strandat 130.460 kb on + strandat 130.460 kb on + strandat 130.460 kb on + strandat 130.468 kb on - strandat 130.471 kb on - strandat 130.489 kb on + strandat 130.521 kb on - strandat 130.606 kb on + strand, within Dshi_3723at 131.047 kb on + strand, within Dshi_3723at 131.316 kb on - strandat 131.316 kb on - strandat 131.339 kb on - strandat 131.358 kb on - strandat 131.367 kb on - strandat 131.371 kb on + strandat 131.371 kb on + strandat 131.376 kb on + strandat 131.379 kb on - strandat 131.420 kb on + strandat 131.512 kb on + strand, within Dshi_3724at 131.563 kb on + strand, within Dshi_3724at 131.678 kb on - strand, within Dshi_3724at 131.690 kb on - strand, within Dshi_3724at 131.722 kb on + strand, within Dshi_3724at 131.806 kb on + strand, within Dshi_3724at 131.813 kb on + strand, within Dshi_3724at 131.824 kb on + strand, within Dshi_3724at 131.830 kb on + strand, within Dshi_3724at 131.857 kb on + strand, within Dshi_3724at 131.867 kb on + strand, within Dshi_3724at 131.872 kb on + strand, within Dshi_3724at 131.882 kb on + strand, within Dshi_3724at 131.885 kb on - strand, within Dshi_3724at 131.963 kb on + strand, within Dshi_3724at 131.981 kb on - strand, within Dshi_3724at 131.981 kb on - strand, within Dshi_3724at 131.992 kb on + strand, within Dshi_3724at 132.000 kb on - strand, within Dshi_3724at 132.000 kb on - strand, within Dshi_3724at 132.010 kb on - strand, within Dshi_3724at 132.047 kb on + strand, within Dshi_3724at 132.128 kb on - strand, within Dshi_3724at 132.140 kb on + strand, within Dshi_3724at 132.148 kb on - strand, within Dshi_3724at 132.209 kb on + strand, within Dshi_3724at 132.216 kb on + strand, within Dshi_3724at 132.241 kb on - strand, within Dshi_3724at 132.241 kb on - strand, within Dshi_3724at 132.276 kb on + strand, within Dshi_3724

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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129,486 - Dshi_3722 0.37 -0.1
129,535 + Dshi_3722 0.40 +1.3
129,565 - Dshi_3722 0.42 +0.2
129,583 + Dshi_3722 0.43 -0.1
129,616 + Dshi_3722 0.45 +0.2
129,631 + Dshi_3722 0.46 +0.7
129,657 - Dshi_3722 0.48 -0.6
129,673 + Dshi_3722 0.49 +0.3
129,673 + Dshi_3722 0.49 +0.9
129,677 + Dshi_3722 0.49 +0.8
129,681 - Dshi_3722 0.50 +0.2
129,681 - Dshi_3722 0.50 +0.4
129,690 + Dshi_3722 0.50 +0.4
129,698 - Dshi_3722 0.51 -0.3
129,729 + Dshi_3722 0.53 -0.4
129,737 - Dshi_3722 0.53 -1.2
129,767 + Dshi_3722 0.55 +1.8
129,776 + Dshi_3722 0.56 +1.0
129,780 - Dshi_3722 0.56 -0.6
129,830 + Dshi_3722 0.59 +0.3
129,831 + Dshi_3722 0.59 -0.1
129,839 - Dshi_3722 0.60 -1.1
129,915 + Dshi_3722 0.65 -1.4
129,915 + Dshi_3722 0.65 +0.1
129,919 + Dshi_3722 0.65 +0.6
129,966 + Dshi_3722 0.68 -0.9
130,008 - Dshi_3722 0.71 +0.9
130,016 - Dshi_3722 0.71 +2.1
130,021 + Dshi_3722 0.72 -0.6
130,089 + Dshi_3722 0.76 +0.4
130,111 - Dshi_3722 0.78 +1.0
130,130 + Dshi_3722 0.79 +0.4
130,197 + Dshi_3722 0.83 -1.0
130,213 + Dshi_3722 0.84 +0.1
130,220 - Dshi_3722 0.85 -0.2
130,221 - Dshi_3722 0.85 -1.3
130,223 + Dshi_3722 0.85 -0.0
130,235 - Dshi_3722 0.86 -0.4
130,235 - Dshi_3722 0.86 +0.7
130,275 + Dshi_3722 0.88 -1.5
130,276 - Dshi_3722 0.88 -1.6
130,283 + Dshi_3722 0.89 +0.1
130,285 + Dshi_3722 0.89 +0.1
130,285 + Dshi_3722 0.89 +0.3
130,293 - Dshi_3722 0.89 +0.3
130,293 - Dshi_3722 0.89 -0.4
130,365 - -0.2
130,423 + +0.3
130,425 + +0.2
130,425 + +0.2
130,437 - -1.0
130,437 - +0.8
130,439 - -0.1
130,449 + -0.5
130,449 + +0.4
130,457 - +0.4
130,457 - -1.4
130,457 - +0.7
130,460 + -1.1
130,460 + -0.4
130,460 + +1.4
130,460 + +0.2
130,468 - +1.0
130,471 - +0.2
130,489 + -0.5
130,521 - -0.1
130,606 + Dshi_3723 0.16 -0.4
131,047 + Dshi_3723 0.70 +2.5
131,316 - +0.4
131,316 - +0.1
131,339 - +0.7
131,358 - +1.4
131,367 - +0.4
131,371 + -0.5
131,371 + -0.2
131,376 + -0.1
131,379 - +0.4
131,420 + +0.1
131,512 + Dshi_3724 0.16 -1.7
131,563 + Dshi_3724 0.21 -0.5
131,678 - Dshi_3724 0.30 +1.2
131,690 - Dshi_3724 0.32 +0.3
131,722 + Dshi_3724 0.34 -0.6
131,806 + Dshi_3724 0.42 -0.6
131,813 + Dshi_3724 0.42 -0.2
131,824 + Dshi_3724 0.43 +0.2
131,830 + Dshi_3724 0.44 +0.5
131,857 + Dshi_3724 0.46 +1.9
131,867 + Dshi_3724 0.47 +0.5
131,872 + Dshi_3724 0.47 -1.1
131,882 + Dshi_3724 0.48 +1.9
131,885 - Dshi_3724 0.48 -0.6
131,963 + Dshi_3724 0.55 +0.2
131,981 - Dshi_3724 0.57 +0.1
131,981 - Dshi_3724 0.57 +0.4
131,992 + Dshi_3724 0.58 -0.1
132,000 - Dshi_3724 0.58 -2.8
132,000 - Dshi_3724 0.58 +0.9
132,010 - Dshi_3724 0.59 +0.7
132,047 + Dshi_3724 0.62 -0.1
132,128 - Dshi_3724 0.69 -0.1
132,140 + Dshi_3724 0.70 -0.6
132,148 - Dshi_3724 0.71 +0.5
132,209 + Dshi_3724 0.76 +1.6
132,216 + Dshi_3724 0.77 -1.1
132,241 - Dshi_3724 0.79 +0.2
132,241 - Dshi_3724 0.79 -0.8
132,276 + Dshi_3724 0.82 +0.4

Or see this region's nucleotide sequence