Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3721

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3719 and Dshi_3720 overlap by 4 nucleotidesDshi_3720 and Dshi_3721 overlap by 13 nucleotidesDshi_3721 and Dshi_3722 overlap by 8 nucleotides Dshi_3719: Dshi_3719 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 124,654 to 127,605 _3719 Dshi_3720: Dshi_3720 - molybdopterin dehydrogenase FAD-binding (RefSeq), at 127,602 to 128,429 _3720 Dshi_3721: Dshi_3721 - (2Fe-2S)-binding domain protein (RefSeq), at 128,417 to 128,926 _3721 Dshi_3722: Dshi_3722 - AMP-dependent synthetase and ligase (RefSeq), at 128,919 to 130,454 _3722 Position (kb) 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 127.523 kb on + strandat 127.623 kb on - strandat 127.653 kb on + strandat 127.759 kb on + strand, within Dshi_3720at 127.773 kb on - strand, within Dshi_3720at 127.852 kb on + strand, within Dshi_3720at 127.860 kb on - strand, within Dshi_3720at 127.873 kb on + strand, within Dshi_3720at 127.911 kb on + strand, within Dshi_3720at 127.911 kb on + strand, within Dshi_3720at 127.911 kb on + strand, within Dshi_3720at 127.919 kb on - strand, within Dshi_3720at 128.013 kb on - strand, within Dshi_3720at 128.018 kb on - strand, within Dshi_3720at 128.038 kb on + strand, within Dshi_3720at 128.038 kb on + strand, within Dshi_3720at 128.038 kb on + strand, within Dshi_3720at 128.065 kb on + strand, within Dshi_3720at 128.065 kb on + strand, within Dshi_3720at 128.073 kb on - strand, within Dshi_3720at 128.158 kb on - strand, within Dshi_3720at 128.189 kb on + strand, within Dshi_3720at 128.200 kb on + strand, within Dshi_3720at 128.276 kb on + strand, within Dshi_3720at 128.284 kb on - strand, within Dshi_3720at 128.345 kb on + strand, within Dshi_3720at 128.345 kb on + strand, within Dshi_3720at 128.400 kb on - strandat 128.462 kb on - strandat 128.462 kb on - strandat 128.462 kb on - strandat 128.490 kb on - strand, within Dshi_3721at 128.527 kb on + strand, within Dshi_3721at 128.663 kb on + strand, within Dshi_3721at 128.669 kb on + strand, within Dshi_3721at 128.669 kb on + strand, within Dshi_3721at 128.671 kb on - strand, within Dshi_3721at 128.782 kb on + strand, within Dshi_3721at 128.891 kb on + strandat 128.906 kb on - strandat 128.906 kb on - strandat 128.909 kb on + strandat 128.997 kb on + strandat 129.047 kb on - strandat 129.060 kb on + strandat 129.090 kb on + strand, within Dshi_3722at 129.123 kb on + strand, within Dshi_3722at 129.130 kb on - strand, within Dshi_3722at 129.206 kb on + strand, within Dshi_3722at 129.214 kb on - strand, within Dshi_3722at 129.238 kb on + strand, within Dshi_3722at 129.246 kb on - strand, within Dshi_3722at 129.281 kb on - strand, within Dshi_3722at 129.281 kb on - strand, within Dshi_3722at 129.327 kb on - strand, within Dshi_3722at 129.358 kb on + strand, within Dshi_3722at 129.366 kb on - strand, within Dshi_3722at 129.373 kb on - strand, within Dshi_3722at 129.385 kb on - strand, within Dshi_3722at 129.419 kb on + strand, within Dshi_3722at 129.419 kb on + strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.455 kb on + strand, within Dshi_3722at 129.455 kb on + strand, within Dshi_3722at 129.455 kb on + strand, within Dshi_3722at 129.463 kb on - strand, within Dshi_3722at 129.486 kb on - strand, within Dshi_3722at 129.535 kb on + strand, within Dshi_3722at 129.565 kb on - strand, within Dshi_3722at 129.583 kb on + strand, within Dshi_3722at 129.616 kb on + strand, within Dshi_3722at 129.631 kb on + strand, within Dshi_3722at 129.657 kb on - strand, within Dshi_3722at 129.673 kb on + strand, within Dshi_3722at 129.673 kb on + strand, within Dshi_3722at 129.677 kb on + strand, within Dshi_3722at 129.681 kb on - strand, within Dshi_3722at 129.681 kb on - strand, within Dshi_3722at 129.690 kb on + strand, within Dshi_3722at 129.698 kb on - strand, within Dshi_3722at 129.729 kb on + strand, within Dshi_3722at 129.737 kb on - strand, within Dshi_3722at 129.767 kb on + strand, within Dshi_3722at 129.776 kb on + strand, within Dshi_3722at 129.780 kb on - strand, within Dshi_3722at 129.830 kb on + strand, within Dshi_3722at 129.831 kb on + strand, within Dshi_3722at 129.839 kb on - strand, within Dshi_3722at 129.915 kb on + strand, within Dshi_3722at 129.915 kb on + strand, within Dshi_3722at 129.919 kb on + strand, within Dshi_3722

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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127,523 + +0.4
127,623 - -0.3
127,653 + +0.5
127,759 + Dshi_3720 0.19 -1.0
127,773 - Dshi_3720 0.21 -1.0
127,852 + Dshi_3720 0.30 -0.3
127,860 - Dshi_3720 0.31 +1.2
127,873 + Dshi_3720 0.33 +2.4
127,911 + Dshi_3720 0.37 +0.2
127,911 + Dshi_3720 0.37 +0.2
127,911 + Dshi_3720 0.37 -0.7
127,919 - Dshi_3720 0.38 +0.2
128,013 - Dshi_3720 0.50 -0.2
128,018 - Dshi_3720 0.50 -1.5
128,038 + Dshi_3720 0.53 +1.2
128,038 + Dshi_3720 0.53 -2.0
128,038 + Dshi_3720 0.53 -1.6
128,065 + Dshi_3720 0.56 -0.9
128,065 + Dshi_3720 0.56 -1.0
128,073 - Dshi_3720 0.57 +0.0
128,158 - Dshi_3720 0.67 -1.3
128,189 + Dshi_3720 0.71 -0.5
128,200 + Dshi_3720 0.72 -0.9
128,276 + Dshi_3720 0.81 -0.8
128,284 - Dshi_3720 0.82 -0.6
128,345 + Dshi_3720 0.90 +0.2
128,345 + Dshi_3720 0.90 -0.8
128,400 - +0.2
128,462 - -0.3
128,462 - -0.4
128,462 - +0.2
128,490 - Dshi_3721 0.14 +1.7
128,527 + Dshi_3721 0.22 -0.5
128,663 + Dshi_3721 0.48 +0.9
128,669 + Dshi_3721 0.49 +0.5
128,669 + Dshi_3721 0.49 -1.1
128,671 - Dshi_3721 0.50 -0.3
128,782 + Dshi_3721 0.72 +0.1
128,891 + -0.4
128,906 - +1.5
128,906 - -0.5
128,909 + -1.3
128,997 + -0.8
129,047 - +0.1
129,060 + +0.9
129,090 + Dshi_3722 0.11 +1.3
129,123 + Dshi_3722 0.13 -2.1
129,130 - Dshi_3722 0.14 -0.1
129,206 + Dshi_3722 0.19 +0.9
129,214 - Dshi_3722 0.19 -1.6
129,238 + Dshi_3722 0.21 -0.6
129,246 - Dshi_3722 0.21 +0.8
129,281 - Dshi_3722 0.24 +0.4
129,281 - Dshi_3722 0.24 +2.2
129,327 - Dshi_3722 0.27 +0.3
129,358 + Dshi_3722 0.29 -3.1
129,366 - Dshi_3722 0.29 +1.7
129,373 - Dshi_3722 0.30 -0.3
129,385 - Dshi_3722 0.30 -0.7
129,419 + Dshi_3722 0.33 +0.4
129,419 + Dshi_3722 0.33 +0.3
129,427 - Dshi_3722 0.33 -0.9
129,427 - Dshi_3722 0.33 +0.7
129,427 - Dshi_3722 0.33 +0.5
129,427 - Dshi_3722 0.33 +0.5
129,455 + Dshi_3722 0.35 +0.7
129,455 + Dshi_3722 0.35 +1.6
129,455 + Dshi_3722 0.35 -1.2
129,463 - Dshi_3722 0.35 -0.4
129,486 - Dshi_3722 0.37 -0.1
129,535 + Dshi_3722 0.40 +1.3
129,565 - Dshi_3722 0.42 +0.2
129,583 + Dshi_3722 0.43 -0.1
129,616 + Dshi_3722 0.45 +0.2
129,631 + Dshi_3722 0.46 +0.7
129,657 - Dshi_3722 0.48 -0.6
129,673 + Dshi_3722 0.49 +0.3
129,673 + Dshi_3722 0.49 +0.9
129,677 + Dshi_3722 0.49 +0.8
129,681 - Dshi_3722 0.50 +0.2
129,681 - Dshi_3722 0.50 +0.4
129,690 + Dshi_3722 0.50 +0.4
129,698 - Dshi_3722 0.51 -0.3
129,729 + Dshi_3722 0.53 -0.4
129,737 - Dshi_3722 0.53 -1.2
129,767 + Dshi_3722 0.55 +1.8
129,776 + Dshi_3722 0.56 +1.0
129,780 - Dshi_3722 0.56 -0.6
129,830 + Dshi_3722 0.59 +0.3
129,831 + Dshi_3722 0.59 -0.1
129,839 - Dshi_3722 0.60 -1.1
129,915 + Dshi_3722 0.65 -1.4
129,915 + Dshi_3722 0.65 +0.1
129,919 + Dshi_3722 0.65 +0.6

Or see this region's nucleotide sequence