Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3578

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3577 and Dshi_3578 are separated by 12 nucleotidesDshi_3578 and Dshi_3579 are separated by 47 nucleotides Dshi_3577: Dshi_3577 - UTP-glucose-1-phosphate uridylyltransferase (RefSeq), at 3,767,288 to 3,768,184 _3577 Dshi_3578: Dshi_3578 - glycosyl transferase group 1 (RefSeq), at 3,768,197 to 3,769,435 _3578 Dshi_3579: Dshi_3579 - hypothetical protein (RefSeq), at 3,769,483 to 3,770,499 _3579 Position (kb) 3768 3769 3770Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3767.202 kb on + strandat 3767.210 kb on - strandat 3767.210 kb on - strandat 3767.264 kb on - strandat 3767.264 kb on - strandat 3767.293 kb on + strandat 3767.301 kb on - strandat 3767.301 kb on - strandat 3767.750 kb on - strand, within Dshi_3577at 3767.828 kb on + strand, within Dshi_3577at 3768.152 kb on + strandat 3768.215 kb on + strandat 3768.357 kb on + strand, within Dshi_3578at 3768.443 kb on + strand, within Dshi_3578at 3768.461 kb on - strand, within Dshi_3578at 3768.516 kb on + strand, within Dshi_3578at 3768.639 kb on + strand, within Dshi_3578at 3768.639 kb on + strand, within Dshi_3578at 3768.652 kb on - strand, within Dshi_3578at 3768.675 kb on + strand, within Dshi_3578at 3768.735 kb on - strand, within Dshi_3578at 3768.784 kb on + strand, within Dshi_3578at 3768.962 kb on - strand, within Dshi_3578at 3769.067 kb on + strand, within Dshi_3578at 3769.099 kb on + strand, within Dshi_3578at 3769.102 kb on + strand, within Dshi_3578at 3769.107 kb on + strand, within Dshi_3578at 3769.257 kb on - strand, within Dshi_3578at 3769.262 kb on - strand, within Dshi_3578at 3769.290 kb on - strand, within Dshi_3578at 3769.291 kb on - strand, within Dshi_3578at 3769.315 kb on - strandat 3769.471 kb on + strandat 3769.471 kb on + strandat 3769.479 kb on - strandat 3769.500 kb on + strandat 3769.585 kb on + strand, within Dshi_3579at 3769.593 kb on - strand, within Dshi_3579at 3769.689 kb on + strand, within Dshi_3579at 3769.697 kb on - strand, within Dshi_3579at 3769.707 kb on - strand, within Dshi_3579at 3769.758 kb on + strand, within Dshi_3579at 3769.766 kb on - strand, within Dshi_3579at 3769.789 kb on - strand, within Dshi_3579at 3769.812 kb on + strand, within Dshi_3579at 3769.856 kb on - strand, within Dshi_3579at 3769.933 kb on - strand, within Dshi_3579at 3769.971 kb on + strand, within Dshi_3579at 3770.029 kb on + strand, within Dshi_3579at 3770.037 kb on - strand, within Dshi_3579at 3770.073 kb on - strand, within Dshi_3579at 3770.099 kb on - strand, within Dshi_3579at 3770.108 kb on + strand, within Dshi_3579at 3770.108 kb on + strand, within Dshi_3579at 3770.190 kb on + strand, within Dshi_3579at 3770.200 kb on + strand, within Dshi_3579at 3770.221 kb on - strand, within Dshi_3579at 3770.221 kb on - strand, within Dshi_3579at 3770.221 kb on - strand, within Dshi_3579at 3770.221 kb on - strand, within Dshi_3579at 3770.241 kb on - strand, within Dshi_3579at 3770.271 kb on + strand, within Dshi_3579at 3770.279 kb on - strand, within Dshi_3579at 3770.415 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,767,202 + -0.8
3,767,210 - +0.3
3,767,210 - -0.7
3,767,264 - -0.9
3,767,264 - +1.0
3,767,293 + -2.1
3,767,301 - +0.6
3,767,301 - +3.5
3,767,750 - Dshi_3577 0.52 -3.3
3,767,828 + Dshi_3577 0.60 +1.3
3,768,152 + +1.1
3,768,215 + -2.4
3,768,357 + Dshi_3578 0.13 +1.3
3,768,443 + Dshi_3578 0.20 +0.0
3,768,461 - Dshi_3578 0.21 -2.3
3,768,516 + Dshi_3578 0.26 +0.8
3,768,639 + Dshi_3578 0.36 +0.2
3,768,639 + Dshi_3578 0.36 +0.0
3,768,652 - Dshi_3578 0.37 -0.2
3,768,675 + Dshi_3578 0.39 +0.8
3,768,735 - Dshi_3578 0.43 +0.2
3,768,784 + Dshi_3578 0.47 +1.1
3,768,962 - Dshi_3578 0.62 +0.9
3,769,067 + Dshi_3578 0.70 -1.2
3,769,099 + Dshi_3578 0.73 +1.1
3,769,102 + Dshi_3578 0.73 +0.4
3,769,107 + Dshi_3578 0.73 +2.3
3,769,257 - Dshi_3578 0.86 +1.7
3,769,262 - Dshi_3578 0.86 +0.5
3,769,290 - Dshi_3578 0.88 +0.2
3,769,291 - Dshi_3578 0.88 -1.4
3,769,315 - -0.3
3,769,471 + +0.8
3,769,471 + +0.8
3,769,479 - +0.7
3,769,500 + +1.2
3,769,585 + Dshi_3579 0.10 +2.2
3,769,593 - Dshi_3579 0.11 +0.6
3,769,689 + Dshi_3579 0.20 +0.1
3,769,697 - Dshi_3579 0.21 +0.9
3,769,707 - Dshi_3579 0.22 -2.5
3,769,758 + Dshi_3579 0.27 +0.3
3,769,766 - Dshi_3579 0.28 -0.5
3,769,789 - Dshi_3579 0.30 +0.3
3,769,812 + Dshi_3579 0.32 -0.7
3,769,856 - Dshi_3579 0.37 +0.5
3,769,933 - Dshi_3579 0.44 -1.0
3,769,971 + Dshi_3579 0.48 -1.8
3,770,029 + Dshi_3579 0.54 -0.7
3,770,037 - Dshi_3579 0.54 -0.3
3,770,073 - Dshi_3579 0.58 +0.6
3,770,099 - Dshi_3579 0.61 +2.2
3,770,108 + Dshi_3579 0.61 +0.1
3,770,108 + Dshi_3579 0.61 +0.8
3,770,190 + Dshi_3579 0.70 +0.8
3,770,200 + Dshi_3579 0.71 -0.3
3,770,221 - Dshi_3579 0.73 +0.0
3,770,221 - Dshi_3579 0.73 -0.1
3,770,221 - Dshi_3579 0.73 -0.8
3,770,221 - Dshi_3579 0.73 -0.7
3,770,241 - Dshi_3579 0.75 -1.6
3,770,271 + Dshi_3579 0.77 +0.6
3,770,279 - Dshi_3579 0.78 -3.2
3,770,415 + -0.3

Or see this region's nucleotide sequence