Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3538

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3536 and Dshi_3537 are separated by 31 nucleotidesDshi_3537 and Dshi_3538 are separated by 46 nucleotidesDshi_3538 and Dshi_3539 overlap by 4 nucleotides Dshi_3536: Dshi_3536 - magnesium chelatase, H subunit (RefSeq), at 3,716,986 to 3,720,570 _3536 Dshi_3537: Dshi_3537 - light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (RefSeq), at 3,720,602 to 3,721,501 _3537 Dshi_3538: Dshi_3538 - magnesium protoporphyrin O-methyltransferase (RefSeq), at 3,721,548 to 3,722,231 _3538 Dshi_3539: Dshi_3539 - PUCC protein (RefSeq), at 3,722,228 to 3,723,673 _3539 Position (kb) 3721 3722 3723Strain fitness (log2 ratio) -3 -2 -1 0 1at 3720.613 kb on + strandat 3720.621 kb on - strandat 3720.630 kb on - strandat 3720.713 kb on + strand, within Dshi_3537at 3720.732 kb on - strand, within Dshi_3537at 3720.732 kb on - strand, within Dshi_3537at 3720.836 kb on - strand, within Dshi_3537at 3720.846 kb on + strand, within Dshi_3537at 3720.904 kb on - strand, within Dshi_3537at 3720.939 kb on - strand, within Dshi_3537at 3721.016 kb on - strand, within Dshi_3537at 3721.055 kb on - strand, within Dshi_3537at 3721.137 kb on - strand, within Dshi_3537at 3721.187 kb on + strand, within Dshi_3537at 3721.202 kb on + strand, within Dshi_3537at 3721.210 kb on + strand, within Dshi_3537at 3721.212 kb on - strand, within Dshi_3537at 3721.385 kb on + strand, within Dshi_3537at 3721.400 kb on + strand, within Dshi_3537at 3721.408 kb on - strand, within Dshi_3537at 3721.423 kb on - strandat 3721.434 kb on + strandat 3721.566 kb on + strandat 3721.566 kb on + strandat 3721.603 kb on + strandat 3721.650 kb on - strand, within Dshi_3538at 3721.830 kb on - strand, within Dshi_3538at 3721.834 kb on - strand, within Dshi_3538at 3721.898 kb on - strand, within Dshi_3538at 3721.967 kb on - strand, within Dshi_3538at 3722.053 kb on - strand, within Dshi_3538at 3722.056 kb on + strand, within Dshi_3538at 3722.115 kb on - strand, within Dshi_3538at 3722.126 kb on - strand, within Dshi_3538at 3722.312 kb on + strandat 3722.555 kb on - strand, within Dshi_3539at 3722.683 kb on - strand, within Dshi_3539at 3722.745 kb on + strand, within Dshi_3539at 3722.958 kb on + strand, within Dshi_3539at 3723.084 kb on + strand, within Dshi_3539at 3723.223 kb on - strand, within Dshi_3539

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,720,613 + -1.5
3,720,621 - -0.7
3,720,630 - -1.0
3,720,713 + Dshi_3537 0.12 -0.3
3,720,732 - Dshi_3537 0.14 -0.8
3,720,732 - Dshi_3537 0.14 -0.5
3,720,836 - Dshi_3537 0.26 +0.4
3,720,846 + Dshi_3537 0.27 -2.5
3,720,904 - Dshi_3537 0.34 -2.1
3,720,939 - Dshi_3537 0.37 -1.3
3,721,016 - Dshi_3537 0.46 -0.7
3,721,055 - Dshi_3537 0.50 -1.8
3,721,137 - Dshi_3537 0.59 +1.7
3,721,187 + Dshi_3537 0.65 -0.0
3,721,202 + Dshi_3537 0.67 -0.3
3,721,210 + Dshi_3537 0.68 +0.0
3,721,212 - Dshi_3537 0.68 -0.1
3,721,385 + Dshi_3537 0.87 +0.1
3,721,400 + Dshi_3537 0.89 +0.0
3,721,408 - Dshi_3537 0.90 -1.8
3,721,423 - -1.1
3,721,434 + -3.1
3,721,566 + -0.6
3,721,566 + -0.1
3,721,603 + -0.8
3,721,650 - Dshi_3538 0.15 -0.8
3,721,830 - Dshi_3538 0.41 -0.3
3,721,834 - Dshi_3538 0.42 +0.7
3,721,898 - Dshi_3538 0.51 -0.3
3,721,967 - Dshi_3538 0.61 -0.4
3,722,053 - Dshi_3538 0.74 -0.5
3,722,056 + Dshi_3538 0.74 +0.0
3,722,115 - Dshi_3538 0.83 -0.3
3,722,126 - Dshi_3538 0.85 -0.9
3,722,312 + -0.9
3,722,555 - Dshi_3539 0.23 +0.1
3,722,683 - Dshi_3539 0.31 -0.8
3,722,745 + Dshi_3539 0.36 -0.4
3,722,958 + Dshi_3539 0.50 -2.4
3,723,084 + Dshi_3539 0.59 -1.1
3,723,223 - Dshi_3539 0.69 -2.1

Or see this region's nucleotide sequence