Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3302

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3301 and Dshi_3302 are separated by 283 nucleotidesDshi_3302 and Dshi_3303 overlap by 4 nucleotides Dshi_3301: Dshi_3301 - branched-chain amino acid aminotransferase (RefSeq), at 3,465,947 to 3,466,816 _3301 Dshi_3302: Dshi_3302 - hypothetical protein (RefSeq), at 3,467,100 to 3,467,408 _3302 Dshi_3303: Dshi_3303 - hypothetical protein (RefSeq), at 3,467,405 to 3,468,508 _3303 Position (kb) 3467 3468Strain fitness (log2 ratio) -1 0 1 2at 3466.824 kb on + strandat 3466.904 kb on + strandat 3466.972 kb on + strandat 3467.133 kb on + strand, within Dshi_3302at 3467.141 kb on - strand, within Dshi_3302at 3467.167 kb on - strand, within Dshi_3302at 3467.486 kb on + strandat 3467.486 kb on + strandat 3467.565 kb on - strand, within Dshi_3303at 3467.597 kb on - strand, within Dshi_3303at 3467.597 kb on - strand, within Dshi_3303at 3467.629 kb on - strand, within Dshi_3303at 3467.633 kb on + strand, within Dshi_3303at 3467.633 kb on + strand, within Dshi_3303at 3467.646 kb on - strand, within Dshi_3303at 3467.711 kb on + strand, within Dshi_3303at 3467.819 kb on - strand, within Dshi_3303at 3467.893 kb on + strand, within Dshi_3303at 3467.913 kb on + strand, within Dshi_3303at 3468.103 kb on - strand, within Dshi_3303at 3468.210 kb on - strand, within Dshi_3303at 3468.315 kb on + strand, within Dshi_3303at 3468.321 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,466,824 + +0.6
3,466,904 + -0.4
3,466,972 + -0.4
3,467,133 + Dshi_3302 0.11 +2.2
3,467,141 - Dshi_3302 0.13 +0.8
3,467,167 - Dshi_3302 0.22 +0.5
3,467,486 + -1.5
3,467,486 + -0.9
3,467,565 - Dshi_3303 0.14 -0.4
3,467,597 - Dshi_3303 0.17 +1.1
3,467,597 - Dshi_3303 0.17 -0.4
3,467,629 - Dshi_3303 0.20 -0.1
3,467,633 + Dshi_3303 0.21 +0.5
3,467,633 + Dshi_3303 0.21 +1.3
3,467,646 - Dshi_3303 0.22 -0.3
3,467,711 + Dshi_3303 0.28 -1.4
3,467,819 - Dshi_3303 0.38 +0.2
3,467,893 + Dshi_3303 0.44 +0.3
3,467,913 + Dshi_3303 0.46 -1.3
3,468,103 - Dshi_3303 0.63 -0.0
3,468,210 - Dshi_3303 0.73 -0.2
3,468,315 + Dshi_3303 0.82 +0.6
3,468,321 + +0.6

Or see this region's nucleotide sequence