Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2967

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2966 and Dshi_2967 are separated by 236 nucleotidesDshi_2967 and Dshi_2968 are separated by 269 nucleotidesDshi_2968 and Dshi_2969 are separated by 12 nucleotides Dshi_2966: Dshi_2966 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq), at 3,131,957 to 3,132,778 _2966 Dshi_2967: Dshi_2967 - FAD dependent oxidoreductase (RefSeq), at 3,133,015 to 3,135,510 _2967 Dshi_2968: Dshi_2968 - hypothetical protein (RefSeq), at 3,135,780 to 3,136,373 _2968 Dshi_2969: Dshi_2969 - alkylhydroperoxidase like protein, AhpD family (RefSeq), at 3,136,386 to 3,136,724 _2969 Position (kb) 3133 3134 3135 3136Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3132.872 kb on + strandat 3132.954 kb on - strandat 3132.975 kb on + strandat 3132.998 kb on - strandat 3133.008 kb on - strandat 3133.073 kb on + strandat 3133.178 kb on - strandat 3133.228 kb on + strandat 3133.229 kb on - strandat 3133.236 kb on - strandat 3133.267 kb on + strand, within Dshi_2967at 3133.288 kb on + strand, within Dshi_2967at 3133.288 kb on + strand, within Dshi_2967at 3133.296 kb on - strand, within Dshi_2967at 3133.476 kb on + strand, within Dshi_2967at 3133.482 kb on + strand, within Dshi_2967at 3133.634 kb on - strand, within Dshi_2967at 3133.786 kb on - strand, within Dshi_2967at 3134.052 kb on + strand, within Dshi_2967at 3134.359 kb on - strand, within Dshi_2967at 3134.367 kb on + strand, within Dshi_2967at 3134.459 kb on + strandat 3134.481 kb on + strand, within Dshi_2967at 3134.481 kb on + strand, within Dshi_2967at 3134.588 kb on + strand, within Dshi_2967at 3134.598 kb on - strand, within Dshi_2967at 3134.621 kb on + strand, within Dshi_2967at 3134.629 kb on - strand, within Dshi_2967at 3134.687 kb on + strand, within Dshi_2967at 3134.687 kb on + strand, within Dshi_2967at 3134.692 kb on + strand, within Dshi_2967at 3134.695 kb on - strand, within Dshi_2967at 3134.695 kb on - strand, within Dshi_2967at 3134.777 kb on + strand, within Dshi_2967at 3134.790 kb on + strand, within Dshi_2967at 3134.855 kb on - strand, within Dshi_2967at 3134.934 kb on + strand, within Dshi_2967at 3134.938 kb on - strand, within Dshi_2967at 3134.973 kb on - strand, within Dshi_2967at 3135.041 kb on - strand, within Dshi_2967at 3135.193 kb on - strand, within Dshi_2967at 3135.235 kb on - strand, within Dshi_2967at 3135.421 kb on - strandat 3135.469 kb on + strandat 3135.559 kb on - strandat 3135.823 kb on + strandat 3135.940 kb on - strand, within Dshi_2968at 3135.961 kb on + strand, within Dshi_2968at 3136.062 kb on - strand, within Dshi_2968at 3136.065 kb on + strand, within Dshi_2968at 3136.212 kb on - strand, within Dshi_2968at 3136.223 kb on - strand, within Dshi_2968at 3136.249 kb on - strand, within Dshi_2968at 3136.279 kb on + strandat 3136.287 kb on - strand, within Dshi_2968at 3136.488 kb on + strand, within Dshi_2969

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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3,132,872 + +1.8
3,132,954 - -0.1
3,132,975 + -1.6
3,132,998 - -0.3
3,133,008 - +0.2
3,133,073 + -0.4
3,133,178 - -0.6
3,133,228 + -1.0
3,133,229 - +1.5
3,133,236 - -1.2
3,133,267 + Dshi_2967 0.10 -0.7
3,133,288 + Dshi_2967 0.11 +1.1
3,133,288 + Dshi_2967 0.11 -0.8
3,133,296 - Dshi_2967 0.11 -0.3
3,133,476 + Dshi_2967 0.18 +1.3
3,133,482 + Dshi_2967 0.19 +1.1
3,133,634 - Dshi_2967 0.25 -0.8
3,133,786 - Dshi_2967 0.31 -1.0
3,134,052 + Dshi_2967 0.42 +1.7
3,134,359 - Dshi_2967 0.54 -2.3
3,134,367 + Dshi_2967 0.54 -1.1
3,134,459 + +1.9
3,134,481 + Dshi_2967 0.59 +1.1
3,134,481 + Dshi_2967 0.59 -1.3
3,134,588 + Dshi_2967 0.63 +2.0
3,134,598 - Dshi_2967 0.63 -1.5
3,134,621 + Dshi_2967 0.64 -1.4
3,134,629 - Dshi_2967 0.65 -1.0
3,134,687 + Dshi_2967 0.67 -0.2
3,134,687 + Dshi_2967 0.67 -0.5
3,134,692 + Dshi_2967 0.67 +1.0
3,134,695 - Dshi_2967 0.67 -1.8
3,134,695 - Dshi_2967 0.67 -0.4
3,134,777 + Dshi_2967 0.71 +0.2
3,134,790 + Dshi_2967 0.71 +0.0
3,134,855 - Dshi_2967 0.74 -0.0
3,134,934 + Dshi_2967 0.77 +0.6
3,134,938 - Dshi_2967 0.77 +0.5
3,134,973 - Dshi_2967 0.78 -1.7
3,135,041 - Dshi_2967 0.81 +2.8
3,135,193 - Dshi_2967 0.87 -1.2
3,135,235 - Dshi_2967 0.89 -0.7
3,135,421 - -0.3
3,135,469 + +0.0
3,135,559 - +1.3
3,135,823 + +0.3
3,135,940 - Dshi_2968 0.27 -0.4
3,135,961 + Dshi_2968 0.30 -0.2
3,136,062 - Dshi_2968 0.47 -0.4
3,136,065 + Dshi_2968 0.48 -0.7
3,136,212 - Dshi_2968 0.73 +0.3
3,136,223 - Dshi_2968 0.75 -0.6
3,136,249 - Dshi_2968 0.79 +0.2
3,136,279 + -0.0
3,136,287 - Dshi_2968 0.85 -0.3
3,136,488 + Dshi_2969 0.30 +1.5

Or see this region's nucleotide sequence