Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2871 and Dshi_2872 overlap by 1 nucleotides Dshi_2872 and Dshi_2873 are separated by 12 nucleotides Dshi_2873 and Dshi_2874 are separated by 3 nucleotides Dshi_2874 and Dshi_2875 are separated by 306 nucleotides Dshi_2875 and Dshi_2876 are separated by 366 nucleotides
Dshi_2871: Dshi_2871 - MaoC domain protein dehydratase (RefSeq), at 3,026,266 to 3,027,297
_2871
Dshi_2872: Dshi_2872 - hypothetical protein (RefSeq), at 3,027,297 to 3,027,500
_2872
Dshi_2873: Dshi_2873 - NnrUfamily protein (RefSeq), at 3,027,513 to 3,028,076
_2873
Dshi_2874: Dshi_2874 - Citrate (pro-3S)-lyase (RefSeq), at 3,028,080 to 3,028,967
_2874
Dshi_2875: Dshi_2875 - hypothetical protein (RefSeq), at 3,029,274 to 3,029,597
_2875
Dshi_2876: Dshi_2876 - malate dehydrogenase, NAD-dependent (RefSeq), at 3,029,964 to 3,030,926
_2876
Position (kb)
3028
3029 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3027.131 kb on + strand, within Dshi_2871 at 3027.131 kb on + strand, within Dshi_2871 at 3027.188 kb on + strand, within Dshi_2871 at 3027.211 kb on + strand at 3027.344 kb on - strand, within Dshi_2872 at 3027.401 kb on - strand, within Dshi_2872 at 3027.575 kb on - strand, within Dshi_2873 at 3027.684 kb on - strand, within Dshi_2873 at 3027.793 kb on + strand, within Dshi_2873 at 3027.793 kb on + strand, within Dshi_2873 at 3027.878 kb on - strand, within Dshi_2873 at 3027.880 kb on - strand, within Dshi_2873 at 3028.005 kb on - strand, within Dshi_2873 at 3028.077 kb on + strand at 3028.090 kb on + strand at 3028.205 kb on + strand, within Dshi_2874 at 3028.296 kb on + strand, within Dshi_2874 at 3028.430 kb on + strand, within Dshi_2874 at 3028.435 kb on + strand, within Dshi_2874 at 3028.438 kb on - strand, within Dshi_2874 at 3028.761 kb on - strand, within Dshi_2874 at 3028.777 kb on + strand, within Dshi_2874 at 3028.818 kb on - strand, within Dshi_2874 at 3028.901 kb on + strand at 3028.909 kb on - strand at 3029.082 kb on - strand at 3029.159 kb on - strand at 3029.176 kb on - strand at 3029.218 kb on - strand at 3029.259 kb on + strand at 3029.271 kb on + strand at 3029.299 kb on + strand at 3029.299 kb on + strand at 3029.317 kb on - strand, within Dshi_2875 at 3029.363 kb on - strand, within Dshi_2875 at 3029.441 kb on + strand, within Dshi_2875 at 3029.452 kb on + strand, within Dshi_2875 at 3029.467 kb on + strand, within Dshi_2875 at 3029.495 kb on + strand, within Dshi_2875 at 3029.538 kb on + strand, within Dshi_2875 at 3029.641 kb on + strand at 3029.668 kb on - strand at 3029.707 kb on + strand at 3029.716 kb on - strand at 3029.782 kb on + strand at 3029.869 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 3,027,131 + Dshi_2871 0.84 -1.1 3,027,131 + Dshi_2871 0.84 +1.5 3,027,188 + Dshi_2871 0.89 -0.3 3,027,211 + -2.1 3,027,344 - Dshi_2872 0.23 -0.5 3,027,401 - Dshi_2872 0.51 -1.8 3,027,575 - Dshi_2873 0.11 -0.1 3,027,684 - Dshi_2873 0.30 -1.2 3,027,793 + Dshi_2873 0.50 +1.8 3,027,793 + Dshi_2873 0.50 +0.9 3,027,878 - Dshi_2873 0.65 +1.2 3,027,880 - Dshi_2873 0.65 -1.2 3,028,005 - Dshi_2873 0.87 +0.6 3,028,077 + +0.6 3,028,090 + +0.1 3,028,205 + Dshi_2874 0.14 +0.6 3,028,296 + Dshi_2874 0.24 -0.1 3,028,430 + Dshi_2874 0.39 +1.4 3,028,435 + Dshi_2874 0.40 -1.8 3,028,438 - Dshi_2874 0.40 -0.1 3,028,761 - Dshi_2874 0.77 +1.6 3,028,777 + Dshi_2874 0.78 -0.2 3,028,818 - Dshi_2874 0.83 -0.5 3,028,901 + +0.2 3,028,909 - -0.3 3,029,082 - -0.5 3,029,159 - +0.8 3,029,176 - -0.5 3,029,218 - +1.5 3,029,259 + +2.3 3,029,271 + +0.6 3,029,299 + +0.3 3,029,299 + +0.8 3,029,317 - Dshi_2875 0.13 +0.8 3,029,363 - Dshi_2875 0.27 +2.6 3,029,441 + Dshi_2875 0.52 -1.0 3,029,452 + Dshi_2875 0.55 +0.0 3,029,467 + Dshi_2875 0.60 -0.6 3,029,495 + Dshi_2875 0.68 +1.1 3,029,538 + Dshi_2875 0.81 +1.0 3,029,641 + +1.2 3,029,668 - +1.7 3,029,707 + +0.5 3,029,716 - -0.2 3,029,782 + +0.3 3,029,869 + -0.7
Or see this region's nucleotide sequence