Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2721

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2720 and Dshi_2721 are separated by 75 nucleotidesDshi_2721 and Dshi_2722 are separated by 84 nucleotidesDshi_2722 and Dshi_2723 are separated by 213 nucleotides Dshi_2720: Dshi_2720 - Endonuclease/exonuclease/phosphatase (RefSeq), at 2,881,448 to 2,882,575 _2720 Dshi_2721: Dshi_2721 - peptidase M24 (RefSeq), at 2,882,651 to 2,884,507 _2721 Dshi_2722: Dshi_2722 - protein of unknown function DUF427 (RefSeq), at 2,884,592 to 2,884,933 _2722 Dshi_2723: Dshi_2723 - Intracellular septation protein A (RefSeq), at 2,885,147 to 2,885,776 _2723 Position (kb) 2882 2883 2884 2885Strain fitness (log2 ratio) -2 -1 0 1at 2881.709 kb on - strand, within Dshi_2720at 2881.720 kb on - strand, within Dshi_2720at 2881.932 kb on + strand, within Dshi_2720at 2882.044 kb on - strand, within Dshi_2720at 2882.160 kb on + strand, within Dshi_2720at 2882.169 kb on - strand, within Dshi_2720at 2882.341 kb on + strand, within Dshi_2720at 2882.360 kb on + strand, within Dshi_2720at 2882.446 kb on + strand, within Dshi_2720at 2882.488 kb on + strandat 2882.527 kb on + strandat 2882.625 kb on + strandat 2882.630 kb on + strandat 2882.741 kb on + strandat 2882.768 kb on - strandat 2882.884 kb on + strand, within Dshi_2721at 2883.058 kb on - strand, within Dshi_2721at 2883.074 kb on - strand, within Dshi_2721at 2883.357 kb on + strand, within Dshi_2721at 2883.390 kb on - strand, within Dshi_2721at 2883.429 kb on - strand, within Dshi_2721at 2883.511 kb on + strand, within Dshi_2721at 2883.572 kb on + strand, within Dshi_2721at 2883.654 kb on + strand, within Dshi_2721at 2883.678 kb on + strand, within Dshi_2721at 2883.824 kb on + strand, within Dshi_2721at 2884.133 kb on - strand, within Dshi_2721at 2884.203 kb on - strand, within Dshi_2721at 2884.345 kb on + strandat 2884.549 kb on + strandat 2884.635 kb on - strand, within Dshi_2722at 2884.650 kb on + strand, within Dshi_2722at 2884.687 kb on + strand, within Dshi_2722at 2884.754 kb on - strand, within Dshi_2722at 2884.778 kb on - strand, within Dshi_2722at 2885.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,881,709 - Dshi_2720 0.23 -2.4
2,881,720 - Dshi_2720 0.24 +0.5
2,881,932 + Dshi_2720 0.43 -1.3
2,882,044 - Dshi_2720 0.53 -1.4
2,882,160 + Dshi_2720 0.63 -0.4
2,882,169 - Dshi_2720 0.64 -0.7
2,882,341 + Dshi_2720 0.79 -1.6
2,882,360 + Dshi_2720 0.81 -1.7
2,882,446 + Dshi_2720 0.88 -1.2
2,882,488 + +0.7
2,882,527 + +0.9
2,882,625 + -0.2
2,882,630 + -0.2
2,882,741 + -0.0
2,882,768 - -2.5
2,882,884 + Dshi_2721 0.13 +0.7
2,883,058 - Dshi_2721 0.22 -1.0
2,883,074 - Dshi_2721 0.23 +0.1
2,883,357 + Dshi_2721 0.38 -0.5
2,883,390 - Dshi_2721 0.40 -0.6
2,883,429 - Dshi_2721 0.42 -0.5
2,883,511 + Dshi_2721 0.46 -0.6
2,883,572 + Dshi_2721 0.50 +0.2
2,883,654 + Dshi_2721 0.54 -1.9
2,883,678 + Dshi_2721 0.55 -0.6
2,883,824 + Dshi_2721 0.63 -0.4
2,884,133 - Dshi_2721 0.80 -0.1
2,884,203 - Dshi_2721 0.84 -0.8
2,884,345 + -1.6
2,884,549 + +0.9
2,884,635 - Dshi_2722 0.13 +0.5
2,884,650 + Dshi_2722 0.17 -0.1
2,884,687 + Dshi_2722 0.28 +0.0
2,884,754 - Dshi_2722 0.47 +0.1
2,884,778 - Dshi_2722 0.54 +1.3
2,885,017 - -0.1

Or see this region's nucleotide sequence