Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2662

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2660 and Dshi_2661 are separated by 48 nucleotidesDshi_2661 and Dshi_2662 are separated by 76 nucleotidesDshi_2662 and Dshi_2663 are separated by 73 nucleotides Dshi_2660: Dshi_2660 - (2Fe-2S)-binding domain protein (RefSeq), at 2,817,800 to 2,818,288 _2660 Dshi_2661: Dshi_2661 - carbon monoxide dehydrogenase subunit G (RefSeq), at 2,818,337 to 2,818,867 _2661 Dshi_2662: Dshi_2662 - extracellular solute-binding protein family 3 (RefSeq), at 2,818,944 to 2,819,846 _2662 Dshi_2663: Dshi_2663 - cytochrome c550, putative (RefSeq), at 2,819,920 to 2,820,594 _2663 Position (kb) 2818 2819 2820Strain fitness (log2 ratio) -2 -1 0 1 2at 2817.947 kb on - strand, within Dshi_2660at 2818.083 kb on - strand, within Dshi_2660at 2818.097 kb on + strand, within Dshi_2660at 2818.112 kb on + strand, within Dshi_2660at 2818.172 kb on + strand, within Dshi_2660at 2818.208 kb on - strand, within Dshi_2660at 2818.242 kb on - strandat 2818.253 kb on + strandat 2818.401 kb on + strand, within Dshi_2661at 2818.574 kb on - strand, within Dshi_2661at 2818.575 kb on + strand, within Dshi_2661at 2818.612 kb on - strand, within Dshi_2661at 2818.677 kb on - strand, within Dshi_2661at 2818.744 kb on + strand, within Dshi_2661at 2818.752 kb on - strand, within Dshi_2661at 2818.762 kb on + strand, within Dshi_2661at 2818.770 kb on - strand, within Dshi_2661at 2818.832 kb on - strandat 2818.872 kb on - strandat 2818.902 kb on + strandat 2818.906 kb on + strandat 2818.922 kb on + strandat 2818.927 kb on + strandat 2818.972 kb on + strandat 2818.989 kb on - strandat 2818.994 kb on - strandat 2818.994 kb on - strandat 2819.007 kb on + strandat 2819.014 kb on + strandat 2819.015 kb on - strandat 2819.038 kb on + strand, within Dshi_2662at 2819.066 kb on - strand, within Dshi_2662at 2819.157 kb on - strand, within Dshi_2662at 2819.224 kb on - strand, within Dshi_2662at 2819.244 kb on + strand, within Dshi_2662at 2819.322 kb on - strand, within Dshi_2662at 2819.322 kb on - strand, within Dshi_2662at 2819.398 kb on - strand, within Dshi_2662at 2819.400 kb on - strand, within Dshi_2662at 2819.433 kb on + strand, within Dshi_2662at 2819.433 kb on + strand, within Dshi_2662at 2819.445 kb on + strand, within Dshi_2662at 2819.445 kb on + strand, within Dshi_2662at 2819.451 kb on - strand, within Dshi_2662at 2819.469 kb on + strand, within Dshi_2662at 2819.527 kb on - strand, within Dshi_2662at 2819.621 kb on - strand, within Dshi_2662at 2819.625 kb on + strand, within Dshi_2662at 2819.779 kb on - strandat 2819.780 kb on - strandat 2819.784 kb on - strandat 2819.784 kb on - strandat 2819.795 kb on + strandat 2819.795 kb on + strandat 2819.798 kb on - strandat 2819.803 kb on - strandat 2819.896 kb on - strandat 2819.915 kb on + strandat 2819.943 kb on + strandat 2819.945 kb on + strandat 2819.945 kb on - strandat 2819.953 kb on - strandat 2819.965 kb on + strandat 2820.085 kb on - strand, within Dshi_2663at 2820.199 kb on - strand, within Dshi_2663at 2820.203 kb on - strand, within Dshi_2663at 2820.215 kb on - strand, within Dshi_2663at 2820.269 kb on - strand, within Dshi_2663at 2820.299 kb on + strand, within Dshi_2663at 2820.315 kb on - strand, within Dshi_2663at 2820.322 kb on - strand, within Dshi_2663at 2820.371 kb on - strand, within Dshi_2663at 2820.382 kb on + strand, within Dshi_2663at 2820.402 kb on - strand, within Dshi_2663at 2820.446 kb on + strand, within Dshi_2663at 2820.449 kb on - strand, within Dshi_2663at 2820.454 kb on - strand, within Dshi_2663at 2820.483 kb on + strand, within Dshi_2663at 2820.658 kb on - strandat 2820.671 kb on - strandat 2820.748 kb on - strandat 2820.797 kb on + strandat 2820.805 kb on - strandat 2820.807 kb on + strandat 2820.815 kb on - strandat 2820.815 kb on - strandat 2820.839 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,817,947 - Dshi_2660 0.30 -0.8
2,818,083 - Dshi_2660 0.58 +0.3
2,818,097 + Dshi_2660 0.61 -1.2
2,818,112 + Dshi_2660 0.64 -1.2
2,818,172 + Dshi_2660 0.76 -0.7
2,818,208 - Dshi_2660 0.83 -1.0
2,818,242 - -0.2
2,818,253 + -0.8
2,818,401 + Dshi_2661 0.12 -1.5
2,818,574 - Dshi_2661 0.45 +2.6
2,818,575 + Dshi_2661 0.45 -0.1
2,818,612 - Dshi_2661 0.52 -2.5
2,818,677 - Dshi_2661 0.64 -0.1
2,818,744 + Dshi_2661 0.77 -0.7
2,818,752 - Dshi_2661 0.78 -0.5
2,818,762 + Dshi_2661 0.80 -0.5
2,818,770 - Dshi_2661 0.82 -0.1
2,818,832 - +0.3
2,818,872 - -0.2
2,818,902 + +0.9
2,818,906 + +0.4
2,818,922 + -0.5
2,818,927 + +1.2
2,818,972 + -0.6
2,818,989 - +0.2
2,818,994 - +0.1
2,818,994 - -0.4
2,819,007 + -0.6
2,819,014 + +0.3
2,819,015 - -1.4
2,819,038 + Dshi_2662 0.10 +0.7
2,819,066 - Dshi_2662 0.14 +1.0
2,819,157 - Dshi_2662 0.24 -0.1
2,819,224 - Dshi_2662 0.31 -0.7
2,819,244 + Dshi_2662 0.33 -0.2
2,819,322 - Dshi_2662 0.42 +0.0
2,819,322 - Dshi_2662 0.42 +0.0
2,819,398 - Dshi_2662 0.50 -0.3
2,819,400 - Dshi_2662 0.50 +1.0
2,819,433 + Dshi_2662 0.54 +0.9
2,819,433 + Dshi_2662 0.54 +0.0
2,819,445 + Dshi_2662 0.55 +1.3
2,819,445 + Dshi_2662 0.55 -0.3
2,819,451 - Dshi_2662 0.56 +0.6
2,819,469 + Dshi_2662 0.58 +1.3
2,819,527 - Dshi_2662 0.65 -1.7
2,819,621 - Dshi_2662 0.75 +0.9
2,819,625 + Dshi_2662 0.75 +0.3
2,819,779 - -0.6
2,819,780 - +0.3
2,819,784 - -0.5
2,819,784 - +0.6
2,819,795 + +0.8
2,819,795 + -0.8
2,819,798 - -0.1
2,819,803 - -0.6
2,819,896 - +0.1
2,819,915 + -2.2
2,819,943 + -2.1
2,819,945 + +0.8
2,819,945 - -1.3
2,819,953 - -0.6
2,819,965 + +1.3
2,820,085 - Dshi_2663 0.24 +1.6
2,820,199 - Dshi_2663 0.41 -0.2
2,820,203 - Dshi_2663 0.42 +0.5
2,820,215 - Dshi_2663 0.44 +0.7
2,820,269 - Dshi_2663 0.52 -0.6
2,820,299 + Dshi_2663 0.56 +0.8
2,820,315 - Dshi_2663 0.59 +0.6
2,820,322 - Dshi_2663 0.60 +0.8
2,820,371 - Dshi_2663 0.67 +1.5
2,820,382 + Dshi_2663 0.68 -1.1
2,820,402 - Dshi_2663 0.71 -0.2
2,820,446 + Dshi_2663 0.78 +1.9
2,820,449 - Dshi_2663 0.78 +0.1
2,820,454 - Dshi_2663 0.79 +1.6
2,820,483 + Dshi_2663 0.83 -0.1
2,820,658 - +0.7
2,820,671 - +0.2
2,820,748 - +0.7
2,820,797 + -0.3
2,820,805 - +0.1
2,820,807 + +0.7
2,820,815 - +0.2
2,820,815 - -1.2
2,820,839 + -0.2

Or see this region's nucleotide sequence