Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2635

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2633 and Dshi_2634 are separated by 99 nucleotidesDshi_2634 and Dshi_2635 are separated by 27 nucleotidesDshi_2635 and Dshi_2636 are separated by 42 nucleotidesDshi_2636 and Dshi_2637 overlap by 1 nucleotides Dshi_2633: Dshi_2633 - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data), at 2,788,656 to 2,790,428 _2633 Dshi_2634: Dshi_2634 - hypothetical protein (RefSeq), at 2,790,528 to 2,790,977 _2634 Dshi_2635: Dshi_2635 - pentapeptide repeat protein (RefSeq), at 2,791,005 to 2,791,742 _2635 Dshi_2636: Dshi_2636 - bacteriochlorophyll 4-vinyl reductase (RefSeq), at 2,791,785 to 2,792,408 _2636 Dshi_2637: Dshi_2637 - magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (RefSeq), at 2,792,408 to 2,794,051 _2637 Position (kb) 2791 2792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2790.507 kb on - strandat 2790.527 kb on - strandat 2790.528 kb on - strandat 2790.528 kb on - strandat 2790.782 kb on + strand, within Dshi_2634at 2790.782 kb on + strand, within Dshi_2634at 2790.790 kb on - strand, within Dshi_2634at 2790.790 kb on - strand, within Dshi_2634at 2790.796 kb on + strand, within Dshi_2634at 2790.821 kb on + strand, within Dshi_2634at 2790.834 kb on - strand, within Dshi_2634at 2790.987 kb on - strandat 2791.002 kb on + strandat 2791.035 kb on - strandat 2791.055 kb on - strandat 2791.129 kb on - strand, within Dshi_2635at 2791.256 kb on + strand, within Dshi_2635at 2791.296 kb on + strand, within Dshi_2635at 2791.296 kb on + strand, within Dshi_2635at 2791.296 kb on + strand, within Dshi_2635at 2791.311 kb on - strand, within Dshi_2635at 2791.311 kb on - strand, within Dshi_2635at 2791.362 kb on - strand, within Dshi_2635at 2791.449 kb on - strand, within Dshi_2635at 2791.476 kb on + strand, within Dshi_2635at 2791.486 kb on + strand, within Dshi_2635at 2791.529 kb on - strand, within Dshi_2635at 2791.591 kb on + strand, within Dshi_2635at 2791.596 kb on + strand, within Dshi_2635at 2791.596 kb on + strand, within Dshi_2635at 2791.599 kb on - strand, within Dshi_2635at 2791.604 kb on - strand, within Dshi_2635at 2791.614 kb on - strand, within Dshi_2635at 2791.614 kb on - strand, within Dshi_2635at 2791.694 kb on - strandat 2791.931 kb on - strand, within Dshi_2636at 2792.083 kb on + strand, within Dshi_2636at 2792.112 kb on - strand, within Dshi_2636at 2792.150 kb on - strand, within Dshi_2636at 2792.291 kb on + strand, within Dshi_2636at 2792.291 kb on + strand, within Dshi_2636at 2792.333 kb on + strand, within Dshi_2636at 2792.347 kb on - strandat 2792.347 kb on - strandat 2792.372 kb on - strandat 2792.387 kb on - strandat 2792.463 kb on - strandat 2792.522 kb on - strandat 2792.527 kb on - strandat 2792.559 kb on + strandat 2792.559 kb on + strandat 2792.673 kb on + strand, within Dshi_2637at 2792.673 kb on + strand, within Dshi_2637at 2792.686 kb on + strand, within Dshi_2637at 2792.694 kb on - strand, within Dshi_2637at 2792.699 kb on - strand, within Dshi_2637

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,790,507 - +0.6
2,790,527 - +1.6
2,790,528 - +0.5
2,790,528 - -0.1
2,790,782 + Dshi_2634 0.56 -0.0
2,790,782 + Dshi_2634 0.56 +0.0
2,790,790 - Dshi_2634 0.58 -0.5
2,790,790 - Dshi_2634 0.58 +0.6
2,790,796 + Dshi_2634 0.60 +1.2
2,790,821 + Dshi_2634 0.65 -0.7
2,790,834 - Dshi_2634 0.68 -0.1
2,790,987 - -2.1
2,791,002 + +0.3
2,791,035 - -1.7
2,791,055 - +0.4
2,791,129 - Dshi_2635 0.17 -0.0
2,791,256 + Dshi_2635 0.34 +0.5
2,791,296 + Dshi_2635 0.39 +1.3
2,791,296 + Dshi_2635 0.39 -1.7
2,791,296 + Dshi_2635 0.39 +1.0
2,791,311 - Dshi_2635 0.41 +2.5
2,791,311 - Dshi_2635 0.41 -0.7
2,791,362 - Dshi_2635 0.48 +2.3
2,791,449 - Dshi_2635 0.60 -0.7
2,791,476 + Dshi_2635 0.64 -2.8
2,791,486 + Dshi_2635 0.65 +1.9
2,791,529 - Dshi_2635 0.71 +0.4
2,791,591 + Dshi_2635 0.79 -1.9
2,791,596 + Dshi_2635 0.80 -0.5
2,791,596 + Dshi_2635 0.80 -0.7
2,791,599 - Dshi_2635 0.80 -1.8
2,791,604 - Dshi_2635 0.81 +1.1
2,791,614 - Dshi_2635 0.83 +0.2
2,791,614 - Dshi_2635 0.83 +0.4
2,791,694 - +1.0
2,791,931 - Dshi_2636 0.23 +0.2
2,792,083 + Dshi_2636 0.48 +1.2
2,792,112 - Dshi_2636 0.52 -0.1
2,792,150 - Dshi_2636 0.58 +1.1
2,792,291 + Dshi_2636 0.81 -0.2
2,792,291 + Dshi_2636 0.81 -0.7
2,792,333 + Dshi_2636 0.88 -0.0
2,792,347 - -1.3
2,792,347 - +0.7
2,792,372 - +1.0
2,792,387 - +0.7
2,792,463 - -0.4
2,792,522 - +0.8
2,792,527 - -0.7
2,792,559 + +0.6
2,792,559 + +1.4
2,792,673 + Dshi_2637 0.16 +0.3
2,792,673 + Dshi_2637 0.16 +0.3
2,792,686 + Dshi_2637 0.17 +0.4
2,792,694 - Dshi_2637 0.17 -2.0
2,792,699 - Dshi_2637 0.18 -0.1

Or see this region's nucleotide sequence