Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2479

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2477 and Dshi_2478 are separated by 63 nucleotidesDshi_2478 and Dshi_2479 are separated by 6 nucleotidesDshi_2479 and Dshi_2480 are separated by 60 nucleotides Dshi_2477: Dshi_2477 - transcriptional regulator, AsnC family (RefSeq), at 2,630,248 to 2,630,712 _2477 Dshi_2478: Dshi_2478 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,630,776 to 2,631,372 _2478 Dshi_2479: Dshi_2479 - transcriptional regulator, LysR family (RefSeq), at 2,631,379 to 2,632,347 _2479 Dshi_2480: Dshi_2480 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,632,408 to 2,633,268 _2480 Position (kb) 2631 2632 2633Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2630.388 kb on - strand, within Dshi_2477at 2630.421 kb on + strand, within Dshi_2477at 2630.421 kb on + strand, within Dshi_2477at 2630.429 kb on - strand, within Dshi_2477at 2630.446 kb on + strand, within Dshi_2477at 2630.450 kb on + strand, within Dshi_2477at 2630.450 kb on + strand, within Dshi_2477at 2630.475 kb on + strand, within Dshi_2477at 2630.510 kb on - strand, within Dshi_2477at 2630.515 kb on + strand, within Dshi_2477at 2630.523 kb on - strand, within Dshi_2477at 2630.525 kb on + strand, within Dshi_2477at 2630.535 kb on + strand, within Dshi_2477at 2630.538 kb on - strand, within Dshi_2477at 2630.557 kb on - strand, within Dshi_2477at 2630.575 kb on + strand, within Dshi_2477at 2630.584 kb on - strand, within Dshi_2477at 2630.659 kb on - strand, within Dshi_2477at 2630.846 kb on + strand, within Dshi_2478at 2630.854 kb on - strand, within Dshi_2478at 2630.862 kb on - strand, within Dshi_2478at 2630.862 kb on - strand, within Dshi_2478at 2630.909 kb on + strand, within Dshi_2478at 2630.923 kb on - strand, within Dshi_2478at 2630.997 kb on + strand, within Dshi_2478at 2631.114 kb on + strand, within Dshi_2478at 2631.258 kb on - strand, within Dshi_2478at 2631.319 kb on - strandat 2631.352 kb on - strandat 2631.423 kb on + strandat 2631.492 kb on - strand, within Dshi_2479at 2631.575 kb on - strand, within Dshi_2479at 2631.643 kb on - strand, within Dshi_2479at 2631.824 kb on - strand, within Dshi_2479at 2632.099 kb on - strand, within Dshi_2479at 2632.102 kb on + strand, within Dshi_2479at 2632.399 kb on - strandat 2632.421 kb on + strandat 2632.429 kb on - strandat 2632.515 kb on + strand, within Dshi_2480at 2632.648 kb on - strand, within Dshi_2480at 2632.651 kb on + strand, within Dshi_2480at 2632.696 kb on + strand, within Dshi_2480at 2632.696 kb on + strand, within Dshi_2480at 2632.696 kb on + strand, within Dshi_2480at 2632.704 kb on - strand, within Dshi_2480at 2632.704 kb on - strand, within Dshi_2480at 2632.704 kb on - strand, within Dshi_2480at 2632.704 kb on - strand, within Dshi_2480at 2632.704 kb on - strand, within Dshi_2480at 2632.741 kb on + strand, within Dshi_2480at 2632.743 kb on + strand, within Dshi_2480at 2632.770 kb on - strand, within Dshi_2480at 2632.851 kb on + strand, within Dshi_2480at 2632.878 kb on + strand, within Dshi_2480at 2632.878 kb on + strand, within Dshi_2480at 2632.878 kb on + strand, within Dshi_2480at 2632.886 kb on - strand, within Dshi_2480at 2632.909 kb on - strand, within Dshi_2480at 2632.963 kb on + strand, within Dshi_2480at 2632.999 kb on - strand, within Dshi_2480at 2633.064 kb on - strand, within Dshi_2480at 2633.076 kb on - strand, within Dshi_2480at 2633.139 kb on + strand, within Dshi_2480at 2633.147 kb on - strand, within Dshi_2480at 2633.147 kb on - strand, within Dshi_2480at 2633.150 kb on + strand, within Dshi_2480at 2633.228 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,630,388 - Dshi_2477 0.30 -1.2
2,630,421 + Dshi_2477 0.37 -0.7
2,630,421 + Dshi_2477 0.37 -0.1
2,630,429 - Dshi_2477 0.39 -0.5
2,630,446 + Dshi_2477 0.43 -1.2
2,630,450 + Dshi_2477 0.43 +0.2
2,630,450 + Dshi_2477 0.43 -1.3
2,630,475 + Dshi_2477 0.49 +0.1
2,630,510 - Dshi_2477 0.56 -0.4
2,630,515 + Dshi_2477 0.57 -0.3
2,630,523 - Dshi_2477 0.59 -0.1
2,630,525 + Dshi_2477 0.60 +0.0
2,630,535 + Dshi_2477 0.62 -0.2
2,630,538 - Dshi_2477 0.62 -1.1
2,630,557 - Dshi_2477 0.66 +0.0
2,630,575 + Dshi_2477 0.70 -1.7
2,630,584 - Dshi_2477 0.72 +0.6
2,630,659 - Dshi_2477 0.88 -1.7
2,630,846 + Dshi_2478 0.12 -1.4
2,630,854 - Dshi_2478 0.13 -0.6
2,630,862 - Dshi_2478 0.14 -0.7
2,630,862 - Dshi_2478 0.14 -2.6
2,630,909 + Dshi_2478 0.22 -0.5
2,630,923 - Dshi_2478 0.25 -0.0
2,630,997 + Dshi_2478 0.37 -2.4
2,631,114 + Dshi_2478 0.57 -1.8
2,631,258 - Dshi_2478 0.81 -0.3
2,631,319 - +0.2
2,631,352 - -2.3
2,631,423 + +0.1
2,631,492 - Dshi_2479 0.12 -1.3
2,631,575 - Dshi_2479 0.20 +0.7
2,631,643 - Dshi_2479 0.27 +0.2
2,631,824 - Dshi_2479 0.46 +0.7
2,632,099 - Dshi_2479 0.74 +0.1
2,632,102 + Dshi_2479 0.75 -1.0
2,632,399 - -2.3
2,632,421 + -0.3
2,632,429 - +2.0
2,632,515 + Dshi_2480 0.12 -0.2
2,632,648 - Dshi_2480 0.28 +1.3
2,632,651 + Dshi_2480 0.28 -1.1
2,632,696 + Dshi_2480 0.33 -0.6
2,632,696 + Dshi_2480 0.33 -0.4
2,632,696 + Dshi_2480 0.33 -1.3
2,632,704 - Dshi_2480 0.34 +1.0
2,632,704 - Dshi_2480 0.34 +0.2
2,632,704 - Dshi_2480 0.34 -0.8
2,632,704 - Dshi_2480 0.34 +0.2
2,632,704 - Dshi_2480 0.34 -1.0
2,632,741 + Dshi_2480 0.39 +0.6
2,632,743 + Dshi_2480 0.39 -0.3
2,632,770 - Dshi_2480 0.42 -1.0
2,632,851 + Dshi_2480 0.51 +0.5
2,632,878 + Dshi_2480 0.55 -0.4
2,632,878 + Dshi_2480 0.55 -0.3
2,632,878 + Dshi_2480 0.55 -0.1
2,632,886 - Dshi_2480 0.56 -1.1
2,632,909 - Dshi_2480 0.58 -0.4
2,632,963 + Dshi_2480 0.64 -0.4
2,632,999 - Dshi_2480 0.69 +0.1
2,633,064 - Dshi_2480 0.76 +0.8
2,633,076 - Dshi_2480 0.78 +0.5
2,633,139 + Dshi_2480 0.85 +1.3
2,633,147 - Dshi_2480 0.86 -0.8
2,633,147 - Dshi_2480 0.86 +3.0
2,633,150 + Dshi_2480 0.86 +3.4
2,633,228 + +0.0

Or see this region's nucleotide sequence