Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2018

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2017 and Dshi_2018 are separated by 151 nucleotidesDshi_2018 and Dshi_2019 are separated by 82 nucleotides Dshi_2017: Dshi_2017 - ABC transporter related (RefSeq), at 2,136,216 to 2,137,217 _2017 Dshi_2018: Dshi_2018 - phage-related hypothetical protein (RefSeq), at 2,137,369 to 2,137,632 _2018 Dshi_2019: Dshi_2019 - ferredoxin-dependent glutamate synthase (RefSeq), at 2,137,715 to 2,139,322 _2019 Position (kb) 2137 2138Strain fitness (log2 ratio) -2 -1 0 1at 2136.606 kb on + strand, within Dshi_2017at 2136.633 kb on - strand, within Dshi_2017at 2136.650 kb on - strand, within Dshi_2017at 2137.052 kb on + strand, within Dshi_2017at 2137.354 kb on + strandat 2137.399 kb on + strand, within Dshi_2018at 2137.407 kb on - strand, within Dshi_2018at 2137.417 kb on - strand, within Dshi_2018at 2137.461 kb on - strand, within Dshi_2018at 2137.466 kb on - strand, within Dshi_2018at 2137.741 kb on - strandat 2137.828 kb on + strandat 2137.842 kb on - strandat 2137.955 kb on - strand, within Dshi_2019at 2138.077 kb on + strand, within Dshi_2019at 2138.195 kb on - strand, within Dshi_2019at 2138.255 kb on + strand, within Dshi_2019at 2138.603 kb on - strand, within Dshi_2019

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,136,606 + Dshi_2017 0.39 +0.9
2,136,633 - Dshi_2017 0.42 +1.1
2,136,650 - Dshi_2017 0.43 +1.1
2,137,052 + Dshi_2017 0.83 +0.3
2,137,354 + +0.2
2,137,399 + Dshi_2018 0.11 +0.3
2,137,407 - Dshi_2018 0.14 -1.0
2,137,417 - Dshi_2018 0.18 -0.3
2,137,461 - Dshi_2018 0.35 -0.5
2,137,466 - Dshi_2018 0.37 -0.7
2,137,741 - -0.5
2,137,828 + +0.0
2,137,842 - +0.1
2,137,955 - Dshi_2019 0.15 -2.1
2,138,077 + Dshi_2019 0.23 +0.5
2,138,195 - Dshi_2019 0.30 -0.7
2,138,255 + Dshi_2019 0.34 +1.0
2,138,603 - Dshi_2019 0.55 -2.0

Or see this region's nucleotide sequence