Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1740

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1739 and Dshi_1740 are separated by 242 nucleotidesDshi_1740 and Dshi_1741 are separated by 35 nucleotidesDshi_1741 and Dshi_1742 are separated by 95 nucleotides Dshi_1739: Dshi_1739 - protein of unknown function DUF808 (RefSeq), at 1,805,810 to 1,806,757 _1739 Dshi_1740: Dshi_1740 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,807,000 to 1,808,001 _1740 Dshi_1741: Dshi_1741 - hypothetical protein (RefSeq), at 1,808,037 to 1,808,192 _1741 Dshi_1742: Dshi_1742 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,808,288 to 1,809,310 _1742 Position (kb) 1806 1807 1808 1809Strain fitness (log2 ratio) -2 -1 0 1 2at 1806.009 kb on - strand, within Dshi_1739at 1806.345 kb on + strand, within Dshi_1739at 1806.716 kb on - strandat 1806.916 kb on + strandat 1807.043 kb on + strandat 1807.267 kb on - strand, within Dshi_1740at 1807.576 kb on + strand, within Dshi_1740at 1807.595 kb on - strand, within Dshi_1740at 1807.697 kb on + strand, within Dshi_1740at 1807.731 kb on - strand, within Dshi_1740at 1807.818 kb on - strand, within Dshi_1740at 1807.818 kb on - strand, within Dshi_1740at 1807.818 kb on - strand, within Dshi_1740at 1807.913 kb on - strandat 1808.109 kb on + strand, within Dshi_1741

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,806,009 - Dshi_1739 0.21 -0.1
1,806,345 + Dshi_1739 0.56 -0.2
1,806,716 - +0.1
1,806,916 + -0.2
1,807,043 + -0.8
1,807,267 - Dshi_1740 0.27 -1.0
1,807,576 + Dshi_1740 0.57 -0.5
1,807,595 - Dshi_1740 0.59 -0.9
1,807,697 + Dshi_1740 0.70 +0.3
1,807,731 - Dshi_1740 0.73 -0.2
1,807,818 - Dshi_1740 0.82 -0.1
1,807,818 - Dshi_1740 0.82 +1.1
1,807,818 - Dshi_1740 0.82 +0.0
1,807,913 - +2.1
1,808,109 + Dshi_1741 0.46 -2.0

Or see this region's nucleotide sequence