Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1737

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1735 and Dshi_1736 are separated by 3 nucleotidesDshi_1736 and Dshi_1737 are separated by 1 nucleotidesDshi_1737 and Dshi_1738 are separated by 304 nucleotides Dshi_1735: Dshi_1735 - putative agmatinase (RefSeq), at 1,801,557 to 1,802,531 _1735 Dshi_1736: Dshi_1736 - protein of unknown function DUF710 (RefSeq), at 1,802,535 to 1,802,939 _1736 Dshi_1737: Dshi_1737 - hypothetical protein (RefSeq), at 1,802,941 to 1,803,369 _1737 Dshi_1738: Dshi_1738 - transketolase (RefSeq), at 1,803,674 to 1,805,647 _1738 Position (kb) 1802 1803 1804Strain fitness (log2 ratio) -1 0 1 2at 1801.991 kb on + strand, within Dshi_1735at 1802.532 kb on + strandat 1802.613 kb on - strand, within Dshi_1736at 1802.912 kb on + strandat 1803.096 kb on + strand, within Dshi_1737at 1803.201 kb on - strand, within Dshi_1737at 1803.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,801,991 + Dshi_1735 0.45 -0.3
1,802,532 + +0.7
1,802,613 - Dshi_1736 0.19 +0.2
1,802,912 + +0.0
1,803,096 + Dshi_1737 0.36 +2.3
1,803,201 - Dshi_1737 0.61 -0.9
1,803,397 - -0.4

Or see this region's nucleotide sequence