Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1679

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1677 and Dshi_1678 are separated by 62 nucleotidesDshi_1678 and Dshi_1679 are separated by 162 nucleotidesDshi_1679 and Dshi_1680 are separated by 135 nucleotides Dshi_1677: Dshi_1677 - Methionine synthase (RefSeq), at 1,745,450 to 1,746,439 _1677 Dshi_1678: Dshi_1678 - hypothetical protein (RefSeq), at 1,746,502 to 1,747,206 _1678 Dshi_1679: Dshi_1679 - hypothetical protein (RefSeq), at 1,747,369 to 1,747,983 _1679 Dshi_1680: Dshi_1680 - ferredoxin (RefSeq), at 1,748,119 to 1,750,191 _1680 Position (kb) 1747 1748Strain fitness (log2 ratio) -2 -1 0 1at 1746.449 kb on + strandat 1746.790 kb on - strand, within Dshi_1678at 1746.798 kb on - strand, within Dshi_1678at 1746.853 kb on + strand, within Dshi_1678at 1746.859 kb on + strand, within Dshi_1678at 1746.892 kb on - strand, within Dshi_1678at 1746.953 kb on + strand, within Dshi_1678at 1746.986 kb on + strand, within Dshi_1678at 1746.994 kb on - strand, within Dshi_1678at 1747.102 kb on - strand, within Dshi_1678at 1747.133 kb on + strand, within Dshi_1678at 1747.133 kb on + strand, within Dshi_1678at 1747.138 kb on + strandat 1747.141 kb on - strandat 1747.141 kb on - strandat 1747.152 kb on + strandat 1747.170 kb on - strandat 1747.170 kb on - strandat 1747.227 kb on - strandat 1747.232 kb on + strandat 1747.237 kb on + strandat 1747.315 kb on + strandat 1747.333 kb on - strandat 1747.385 kb on + strandat 1747.403 kb on - strandat 1747.446 kb on - strand, within Dshi_1679at 1747.447 kb on + strand, within Dshi_1679at 1747.506 kb on - strand, within Dshi_1679at 1747.522 kb on - strand, within Dshi_1679at 1747.583 kb on + strand, within Dshi_1679at 1747.583 kb on + strand, within Dshi_1679at 1747.591 kb on - strand, within Dshi_1679at 1747.608 kb on + strand, within Dshi_1679at 1747.611 kb on - strand, within Dshi_1679at 1747.680 kb on + strand, within Dshi_1679at 1747.788 kb on + strand, within Dshi_1679at 1747.798 kb on + strand, within Dshi_1679at 1747.882 kb on + strand, within Dshi_1679at 1747.885 kb on - strand, within Dshi_1679at 1747.950 kb on + strandat 1747.961 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,746,449 + -1.1
1,746,790 - Dshi_1678 0.41 -1.3
1,746,798 - Dshi_1678 0.42 +0.9
1,746,853 + Dshi_1678 0.50 -0.3
1,746,859 + Dshi_1678 0.51 +0.1
1,746,892 - Dshi_1678 0.55 -0.2
1,746,953 + Dshi_1678 0.64 +0.5
1,746,986 + Dshi_1678 0.69 +1.1
1,746,994 - Dshi_1678 0.70 -0.6
1,747,102 - Dshi_1678 0.85 -0.3
1,747,133 + Dshi_1678 0.90 -0.6
1,747,133 + Dshi_1678 0.90 +0.6
1,747,138 + -0.2
1,747,141 - -0.6
1,747,141 - -0.4
1,747,152 + -0.8
1,747,170 - -0.9
1,747,170 - +0.7
1,747,227 - +1.3
1,747,232 + -0.4
1,747,237 + -0.7
1,747,315 + +0.5
1,747,333 - -0.4
1,747,385 + +1.3
1,747,403 - +0.1
1,747,446 - Dshi_1679 0.13 +0.3
1,747,447 + Dshi_1679 0.13 -0.7
1,747,506 - Dshi_1679 0.22 +0.6
1,747,522 - Dshi_1679 0.25 -0.2
1,747,583 + Dshi_1679 0.35 +1.2
1,747,583 + Dshi_1679 0.35 +0.5
1,747,591 - Dshi_1679 0.36 +0.4
1,747,608 + Dshi_1679 0.39 +0.7
1,747,611 - Dshi_1679 0.39 +0.4
1,747,680 + Dshi_1679 0.51 -0.2
1,747,788 + Dshi_1679 0.68 +1.0
1,747,798 + Dshi_1679 0.70 +0.0
1,747,882 + Dshi_1679 0.83 -0.2
1,747,885 - Dshi_1679 0.84 +0.5
1,747,950 + -2.3
1,747,961 + +0.6

Or see this region's nucleotide sequence