Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1656

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1655 and Dshi_1656 overlap by 4 nucleotidesDshi_1656 and Dshi_1657 overlap by 4 nucleotidesDshi_1657 and Dshi_1658 overlap by 4 nucleotides Dshi_1655: Dshi_1655 - glucokinase (EC 2.7.1.2) (from data), at 1,721,208 to 1,722,179 _1655 Dshi_1656: Dshi_1656 - ABC-3 protein (RefSeq), at 1,722,176 to 1,723,027 _1656 Dshi_1657: Dshi_1657 - ABC-3 protein (RefSeq), at 1,723,024 to 1,723,923 _1657 Dshi_1658: Dshi_1658 - ABC transporter related (RefSeq), at 1,723,920 to 1,724,816 _1658 Position (kb) 1722 1723 1724Strain fitness (log2 ratio) -1 0 1 2 3at 1721.284 kb on + strandat 1721.347 kb on + strand, within Dshi_1655at 1721.411 kb on + strand, within Dshi_1655at 1721.647 kb on + strand, within Dshi_1655at 1721.925 kb on - strand, within Dshi_1655at 1721.939 kb on + strand, within Dshi_1655at 1722.208 kb on - strandat 1722.269 kb on - strand, within Dshi_1656at 1722.364 kb on + strand, within Dshi_1656at 1722.367 kb on - strand, within Dshi_1656at 1722.447 kb on + strand, within Dshi_1656at 1722.447 kb on + strand, within Dshi_1656at 1722.447 kb on + strand, within Dshi_1656at 1722.455 kb on - strand, within Dshi_1656at 1722.455 kb on - strand, within Dshi_1656at 1722.455 kb on - strand, within Dshi_1656at 1722.455 kb on - strand, within Dshi_1656at 1722.505 kb on + strand, within Dshi_1656at 1722.740 kb on + strand, within Dshi_1656at 1722.849 kb on + strand, within Dshi_1656at 1722.935 kb on - strand, within Dshi_1656at 1722.942 kb on + strandat 1723.043 kb on - strandat 1723.043 kb on - strandat 1723.066 kb on - strandat 1723.078 kb on - strandat 1723.091 kb on + strandat 1723.114 kb on + strandat 1723.236 kb on + strand, within Dshi_1657at 1723.288 kb on - strand, within Dshi_1657at 1723.335 kb on + strand, within Dshi_1657at 1723.432 kb on + strand, within Dshi_1657at 1723.515 kb on + strand, within Dshi_1657at 1723.653 kb on + strand, within Dshi_1657at 1723.683 kb on + strand, within Dshi_1657at 1723.709 kb on + strand, within Dshi_1657at 1723.783 kb on - strand, within Dshi_1657at 1723.815 kb on + strand, within Dshi_1657at 1723.845 kb on - strandat 1723.847 kb on + strandat 1723.855 kb on - strandat 1723.942 kb on + strandat 1723.952 kb on + strandat 1723.967 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,721,284 + -0.7
1,721,347 + Dshi_1655 0.14 -0.3
1,721,411 + Dshi_1655 0.21 +0.9
1,721,647 + Dshi_1655 0.45 +0.3
1,721,925 - Dshi_1655 0.74 -1.7
1,721,939 + Dshi_1655 0.75 -1.4
1,722,208 - -0.6
1,722,269 - Dshi_1656 0.11 -1.3
1,722,364 + Dshi_1656 0.22 +1.7
1,722,367 - Dshi_1656 0.22 +2.3
1,722,447 + Dshi_1656 0.32 +1.1
1,722,447 + Dshi_1656 0.32 +1.6
1,722,447 + Dshi_1656 0.32 +2.4
1,722,455 - Dshi_1656 0.33 +2.0
1,722,455 - Dshi_1656 0.33 +2.7
1,722,455 - Dshi_1656 0.33 +1.9
1,722,455 - Dshi_1656 0.33 +1.9
1,722,505 + Dshi_1656 0.39 +1.4
1,722,740 + Dshi_1656 0.66 +1.8
1,722,849 + Dshi_1656 0.79 +2.3
1,722,935 - Dshi_1656 0.89 +1.9
1,722,942 + +2.2
1,723,043 - -0.1
1,723,043 - -0.2
1,723,066 - +0.3
1,723,078 - +1.0
1,723,091 + +0.2
1,723,114 + -1.0
1,723,236 + Dshi_1657 0.24 +1.8
1,723,288 - Dshi_1657 0.29 +3.1
1,723,335 + Dshi_1657 0.35 +2.1
1,723,432 + Dshi_1657 0.45 +0.7
1,723,515 + Dshi_1657 0.55 +1.8
1,723,653 + Dshi_1657 0.70 +1.5
1,723,683 + Dshi_1657 0.73 +2.6
1,723,709 + Dshi_1657 0.76 +2.7
1,723,783 - Dshi_1657 0.84 +1.9
1,723,815 + Dshi_1657 0.88 +1.0
1,723,845 - +1.5
1,723,847 + +2.4
1,723,855 - +3.2
1,723,942 + +1.7
1,723,952 + +1.6
1,723,967 + +1.9

Or see this region's nucleotide sequence