Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1576 and Dshi_1577 are separated by 142 nucleotides Dshi_1577 and Dshi_1578 overlap by 4 nucleotides Dshi_1578 and Dshi_1579 overlap by 4 nucleotides Dshi_1579 and Dshi_1580 overlap by 22 nucleotides
Dshi_1576: Dshi_1576 - putative TIM-barrel protein, nifR3 family (RefSeq), at 1,643,396 to 1,644,397
_1576
Dshi_1577: Dshi_1577 - 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (RefSeq), at 1,644,540 to 1,645,742
_1577
Dshi_1578: Dshi_1578 - phosphatidylglycerophosphatase A (RefSeq), at 1,645,739 to 1,646,227
_1578
Dshi_1579: Dshi_1579 - CinA domain protein (RefSeq), at 1,646,224 to 1,646,706
_1579
Dshi_1580: Dshi_1580 - cyclase/dehydrase (RefSeq), at 1,646,685 to 1,647,200
_1580
Position (kb)
1644
1645
1646 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1643.548 kb on - strand, within Dshi_1576 at 1643.622 kb on - strand, within Dshi_1576 at 1643.632 kb on - strand, within Dshi_1576 at 1643.764 kb on - strand, within Dshi_1576 at 1643.805 kb on + strand, within Dshi_1576 at 1643.940 kb on - strand, within Dshi_1576 at 1644.103 kb on - strand, within Dshi_1576 at 1644.107 kb on - strand, within Dshi_1576 at 1644.132 kb on + strand, within Dshi_1576 at 1644.140 kb on - strand, within Dshi_1576 at 1644.158 kb on + strand, within Dshi_1576 at 1644.213 kb on + strand, within Dshi_1576 at 1644.224 kb on + strand, within Dshi_1576 at 1644.245 kb on - strand, within Dshi_1576 at 1644.299 kb on - strand at 1644.299 kb on - strand at 1644.552 kb on + strand at 1645.736 kb on + strand at 1645.738 kb on + strand at 1646.264 kb on + strand at 1646.416 kb on - strand, within Dshi_1579 at 1646.422 kb on - strand, within Dshi_1579 at 1646.683 kb on + strand at 1646.693 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 1,643,548 - Dshi_1576 0.15 +0.5 1,643,622 - Dshi_1576 0.23 +0.5 1,643,632 - Dshi_1576 0.24 +0.7 1,643,764 - Dshi_1576 0.37 +0.0 1,643,805 + Dshi_1576 0.41 -2.2 1,643,940 - Dshi_1576 0.54 +0.5 1,644,103 - Dshi_1576 0.71 +1.5 1,644,107 - Dshi_1576 0.71 +0.7 1,644,132 + Dshi_1576 0.73 -0.1 1,644,140 - Dshi_1576 0.74 -0.3 1,644,158 + Dshi_1576 0.76 +0.5 1,644,213 + Dshi_1576 0.82 +1.1 1,644,224 + Dshi_1576 0.83 -0.6 1,644,245 - Dshi_1576 0.85 +0.4 1,644,299 - +1.9 1,644,299 - +2.2 1,644,552 + +0.1 1,645,736 + -2.1 1,645,738 + +0.8 1,646,264 + -0.4 1,646,416 - Dshi_1579 0.40 +0.0 1,646,422 - Dshi_1579 0.41 -0.6 1,646,683 + -1.2 1,646,693 + +0.1
Or see this region's nucleotide sequence