Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1403

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1402 and Dshi_1403 are separated by 4 nucleotidesDshi_1403 and Dshi_1404 are separated by 109 nucleotides Dshi_1402: Dshi_1402 - inner-membrane translocator (RefSeq), at 1,455,157 to 1,456,365 _1402 Dshi_1403: Dshi_1403 - inner-membrane translocator (RefSeq), at 1,456,370 to 1,457,401 _1403 Dshi_1404: Dshi_1404 - branched-chain amino acid ABC transporter, periplasmic binding protein, putative (RefSeq), at 1,457,511 to 1,458,866 _1404 Position (kb) 1456 1457 1458Strain fitness (log2 ratio) -2 -1 0 1 2at 1455.404 kb on - strand, within Dshi_1402at 1455.451 kb on + strand, within Dshi_1402at 1455.459 kb on - strand, within Dshi_1402at 1455.521 kb on + strand, within Dshi_1402at 1455.582 kb on + strand, within Dshi_1402at 1455.586 kb on + strand, within Dshi_1402at 1455.911 kb on + strand, within Dshi_1402at 1455.946 kb on + strand, within Dshi_1402at 1455.946 kb on + strand, within Dshi_1402at 1455.968 kb on + strand, within Dshi_1402at 1456.163 kb on - strand, within Dshi_1402at 1456.213 kb on - strand, within Dshi_1402at 1456.270 kb on + strandat 1456.283 kb on + strandat 1456.301 kb on - strandat 1456.363 kb on + strandat 1456.375 kb on - strandat 1456.456 kb on + strandat 1456.560 kb on - strand, within Dshi_1403at 1456.576 kb on + strand, within Dshi_1403at 1456.576 kb on + strand, within Dshi_1403at 1456.584 kb on - strand, within Dshi_1403at 1456.606 kb on - strand, within Dshi_1403at 1456.729 kb on - strand, within Dshi_1403at 1456.764 kb on - strand, within Dshi_1403at 1456.795 kb on - strand, within Dshi_1403at 1456.997 kb on + strand, within Dshi_1403at 1457.147 kb on + strand, within Dshi_1403at 1457.215 kb on + strand, within Dshi_1403at 1457.237 kb on - strand, within Dshi_1403at 1457.302 kb on - strandat 1457.358 kb on + strandat 1457.441 kb on - strandat 1457.451 kb on - strandat 1457.451 kb on - strandat 1457.619 kb on - strandat 1457.697 kb on + strand, within Dshi_1404at 1457.702 kb on + strand, within Dshi_1404at 1457.705 kb on - strand, within Dshi_1404at 1457.705 kb on - strand, within Dshi_1404at 1457.723 kb on - strand, within Dshi_1404at 1457.751 kb on + strand, within Dshi_1404at 1457.764 kb on - strand, within Dshi_1404at 1457.765 kb on + strand, within Dshi_1404at 1457.766 kb on - strand, within Dshi_1404at 1457.773 kb on - strand, within Dshi_1404at 1457.773 kb on - strand, within Dshi_1404at 1457.823 kb on + strand, within Dshi_1404at 1457.831 kb on - strand, within Dshi_1404at 1458.009 kb on + strand, within Dshi_1404at 1458.051 kb on - strand, within Dshi_1404at 1458.051 kb on - strand, within Dshi_1404at 1458.142 kb on + strand, within Dshi_1404at 1458.166 kb on + strand, within Dshi_1404at 1458.183 kb on + strand, within Dshi_1404at 1458.195 kb on + strand, within Dshi_1404at 1458.231 kb on - strand, within Dshi_1404at 1458.298 kb on - strand, within Dshi_1404

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,455,404 - Dshi_1402 0.20 -0.5
1,455,451 + Dshi_1402 0.24 -0.1
1,455,459 - Dshi_1402 0.25 -1.4
1,455,521 + Dshi_1402 0.30 +0.1
1,455,582 + Dshi_1402 0.35 -1.5
1,455,586 + Dshi_1402 0.35 -0.1
1,455,911 + Dshi_1402 0.62 +0.4
1,455,946 + Dshi_1402 0.65 +0.4
1,455,946 + Dshi_1402 0.65 +0.3
1,455,968 + Dshi_1402 0.67 -2.2
1,456,163 - Dshi_1402 0.83 +1.1
1,456,213 - Dshi_1402 0.87 +0.1
1,456,270 + +0.7
1,456,283 + +0.3
1,456,301 - +0.1
1,456,363 + +0.1
1,456,375 - +1.5
1,456,456 + -0.7
1,456,560 - Dshi_1403 0.18 -1.0
1,456,576 + Dshi_1403 0.20 +0.6
1,456,576 + Dshi_1403 0.20 -0.7
1,456,584 - Dshi_1403 0.21 -0.4
1,456,606 - Dshi_1403 0.23 -2.2
1,456,729 - Dshi_1403 0.35 +0.5
1,456,764 - Dshi_1403 0.38 +2.0
1,456,795 - Dshi_1403 0.41 -0.2
1,456,997 + Dshi_1403 0.61 +0.1
1,457,147 + Dshi_1403 0.75 -0.4
1,457,215 + Dshi_1403 0.82 +1.4
1,457,237 - Dshi_1403 0.84 +2.1
1,457,302 - +0.5
1,457,358 + +0.9
1,457,441 - -1.3
1,457,451 - -2.0
1,457,451 - +1.2
1,457,619 - -1.8
1,457,697 + Dshi_1404 0.14 +0.3
1,457,702 + Dshi_1404 0.14 -0.0
1,457,705 - Dshi_1404 0.14 +0.3
1,457,705 - Dshi_1404 0.14 +1.3
1,457,723 - Dshi_1404 0.16 -0.1
1,457,751 + Dshi_1404 0.18 +1.8
1,457,764 - Dshi_1404 0.19 +0.1
1,457,765 + Dshi_1404 0.19 -0.2
1,457,766 - Dshi_1404 0.19 +0.7
1,457,773 - Dshi_1404 0.19 +1.8
1,457,773 - Dshi_1404 0.19 +0.1
1,457,823 + Dshi_1404 0.23 -0.5
1,457,831 - Dshi_1404 0.24 +1.0
1,458,009 + Dshi_1404 0.37 -0.3
1,458,051 - Dshi_1404 0.40 -0.1
1,458,051 - Dshi_1404 0.40 -0.7
1,458,142 + Dshi_1404 0.47 +1.3
1,458,166 + Dshi_1404 0.48 +0.4
1,458,183 + Dshi_1404 0.50 -0.4
1,458,195 + Dshi_1404 0.50 +0.5
1,458,231 - Dshi_1404 0.53 +1.1
1,458,298 - Dshi_1404 0.58 +0.9

Or see this region's nucleotide sequence