Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1269

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1268 and Dshi_1269 overlap by 4 nucleotidesDshi_1269 and Dshi_1270 are separated by 98 nucleotides Dshi_1268: Dshi_1268 - PfkB domain protein (RefSeq), at 1,316,838 to 1,317,839 _1268 Dshi_1269: Dshi_1269 - thiamine pyrophosphate protein central region (RefSeq), at 1,317,836 to 1,319,701 _1269 Dshi_1270: Dshi_1270 - oxidoreductase domain protein (RefSeq), at 1,319,800 to 1,320,918 _1270 Position (kb) 1317 1318 1319 1320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1316.836 kb on + strandat 1316.934 kb on - strandat 1317.079 kb on + strand, within Dshi_1268at 1317.157 kb on + strand, within Dshi_1268at 1317.180 kb on + strand, within Dshi_1268at 1317.365 kb on + strand, within Dshi_1268at 1317.371 kb on + strand, within Dshi_1268at 1317.371 kb on + strand, within Dshi_1268at 1317.397 kb on - strand, within Dshi_1268at 1317.402 kb on + strand, within Dshi_1268at 1317.448 kb on + strand, within Dshi_1268at 1317.503 kb on - strand, within Dshi_1268at 1317.513 kb on - strand, within Dshi_1268at 1317.736 kb on - strand, within Dshi_1268at 1317.911 kb on + strandat 1317.923 kb on + strandat 1317.923 kb on + strandat 1317.929 kb on - strandat 1318.019 kb on + strandat 1318.025 kb on - strand, within Dshi_1269at 1318.025 kb on - strand, within Dshi_1269at 1318.052 kb on - strand, within Dshi_1269at 1318.141 kb on - strand, within Dshi_1269at 1318.164 kb on + strand, within Dshi_1269at 1318.235 kb on + strand, within Dshi_1269at 1318.322 kb on - strand, within Dshi_1269at 1318.333 kb on - strand, within Dshi_1269at 1318.529 kb on - strand, within Dshi_1269at 1318.741 kb on + strand, within Dshi_1269at 1318.833 kb on - strand, within Dshi_1269at 1318.925 kb on + strand, within Dshi_1269at 1318.946 kb on + strand, within Dshi_1269at 1319.063 kb on - strand, within Dshi_1269at 1319.120 kb on + strand, within Dshi_1269at 1319.123 kb on - strand, within Dshi_1269at 1319.130 kb on + strand, within Dshi_1269at 1319.148 kb on - strand, within Dshi_1269at 1319.178 kb on - strand, within Dshi_1269at 1319.178 kb on - strand, within Dshi_1269at 1319.267 kb on + strand, within Dshi_1269at 1319.330 kb on + strand, within Dshi_1269at 1319.372 kb on - strand, within Dshi_1269at 1319.378 kb on - strand, within Dshi_1269at 1319.379 kb on - strand, within Dshi_1269at 1319.417 kb on - strand, within Dshi_1269at 1319.628 kb on + strandat 1319.631 kb on + strandat 1319.662 kb on - strandat 1319.734 kb on - strandat 1319.734 kb on - strandat 1319.807 kb on + strandat 1319.889 kb on - strandat 1319.954 kb on - strand, within Dshi_1270at 1319.959 kb on + strand, within Dshi_1270at 1319.980 kb on + strand, within Dshi_1270at 1320.185 kb on + strand, within Dshi_1270at 1320.272 kb on - strand, within Dshi_1270at 1320.508 kb on + strand, within Dshi_1270at 1320.516 kb on - strand, within Dshi_1270at 1320.652 kb on - strand, within Dshi_1270at 1320.653 kb on - strand, within Dshi_1270at 1320.682 kb on + strand, within Dshi_1270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,316,836 + -0.4
1,316,934 - +1.0
1,317,079 + Dshi_1268 0.24 +0.4
1,317,157 + Dshi_1268 0.32 +0.1
1,317,180 + Dshi_1268 0.34 -1.2
1,317,365 + Dshi_1268 0.53 -0.3
1,317,371 + Dshi_1268 0.53 +1.2
1,317,371 + Dshi_1268 0.53 +2.3
1,317,397 - Dshi_1268 0.56 -0.7
1,317,402 + Dshi_1268 0.56 -3.5
1,317,448 + Dshi_1268 0.61 +1.3
1,317,503 - Dshi_1268 0.66 +2.2
1,317,513 - Dshi_1268 0.67 -1.7
1,317,736 - Dshi_1268 0.90 +1.1
1,317,911 + -0.7
1,317,923 + +1.3
1,317,923 + +1.1
1,317,929 - -0.7
1,318,019 + +0.8
1,318,025 - Dshi_1269 0.10 -1.3
1,318,025 - Dshi_1269 0.10 +0.4
1,318,052 - Dshi_1269 0.12 -0.3
1,318,141 - Dshi_1269 0.16 +0.6
1,318,164 + Dshi_1269 0.18 +1.7
1,318,235 + Dshi_1269 0.21 -1.5
1,318,322 - Dshi_1269 0.26 -0.6
1,318,333 - Dshi_1269 0.27 +0.9
1,318,529 - Dshi_1269 0.37 -0.2
1,318,741 + Dshi_1269 0.48 +2.0
1,318,833 - Dshi_1269 0.53 -0.0
1,318,925 + Dshi_1269 0.58 +0.1
1,318,946 + Dshi_1269 0.59 -0.3
1,319,063 - Dshi_1269 0.66 +0.5
1,319,120 + Dshi_1269 0.69 +0.3
1,319,123 - Dshi_1269 0.69 +0.1
1,319,130 + Dshi_1269 0.69 +0.1
1,319,148 - Dshi_1269 0.70 +0.2
1,319,178 - Dshi_1269 0.72 +0.9
1,319,178 - Dshi_1269 0.72 +1.0
1,319,267 + Dshi_1269 0.77 -0.7
1,319,330 + Dshi_1269 0.80 -0.3
1,319,372 - Dshi_1269 0.82 -0.7
1,319,378 - Dshi_1269 0.83 -2.2
1,319,379 - Dshi_1269 0.83 +0.2
1,319,417 - Dshi_1269 0.85 +0.7
1,319,628 + -0.3
1,319,631 + -2.5
1,319,662 - +1.3
1,319,734 - -0.4
1,319,734 - +0.3
1,319,807 + +0.2
1,319,889 - -0.2
1,319,954 - Dshi_1270 0.14 -0.4
1,319,959 + Dshi_1270 0.14 -1.5
1,319,980 + Dshi_1270 0.16 -1.0
1,320,185 + Dshi_1270 0.34 -2.7
1,320,272 - Dshi_1270 0.42 -0.0
1,320,508 + Dshi_1270 0.63 -1.5
1,320,516 - Dshi_1270 0.64 +0.4
1,320,652 - Dshi_1270 0.76 +0.1
1,320,653 - Dshi_1270 0.76 -0.9
1,320,682 + Dshi_1270 0.79 +0.6

Or see this region's nucleotide sequence