Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1095

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1094 and Dshi_1095 are separated by 113 nucleotidesDshi_1095 and Dshi_1096 are separated by 56 nucleotidesDshi_1096 and Dshi_1097 are separated by 145 nucleotides Dshi_1094: Dshi_1094 - transcriptional regulator, Fis family (RefSeq), at 1,121,391 to 1,122,380 _1094 Dshi_1095: Dshi_1095 - aldehyde dehydrogenase (RefSeq), at 1,122,494 to 1,124,014 _1095 Dshi_1096: Dshi_1096 - lipolytic enzyme, G-D-S-L (RefSeq), at 1,124,071 to 1,124,751 _1096 Dshi_1097: Dshi_1097 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 1,124,897 to 1,125,964 _1097 Position (kb) 1122 1123 1124 1125Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1121.498 kb on + strand, within Dshi_1094at 1121.498 kb on + strand, within Dshi_1094at 1121.498 kb on + strand, within Dshi_1094at 1121.699 kb on + strand, within Dshi_1094at 1121.810 kb on - strand, within Dshi_1094at 1121.843 kb on - strand, within Dshi_1094at 1121.947 kb on + strand, within Dshi_1094at 1122.022 kb on - strand, within Dshi_1094at 1122.032 kb on - strand, within Dshi_1094at 1122.069 kb on + strand, within Dshi_1094at 1122.396 kb on + strandat 1122.415 kb on + strandat 1122.434 kb on + strandat 1122.434 kb on + strandat 1122.442 kb on - strandat 1122.442 kb on - strandat 1122.442 kb on - strandat 1122.443 kb on - strandat 1122.462 kb on + strandat 1122.889 kb on - strand, within Dshi_1095at 1122.889 kb on - strand, within Dshi_1095at 1122.988 kb on - strand, within Dshi_1095at 1123.039 kb on + strand, within Dshi_1095at 1123.088 kb on + strand, within Dshi_1095at 1123.127 kb on + strand, within Dshi_1095at 1123.182 kb on - strand, within Dshi_1095at 1123.211 kb on - strand, within Dshi_1095at 1123.323 kb on - strand, within Dshi_1095at 1123.335 kb on - strand, within Dshi_1095at 1123.398 kb on - strand, within Dshi_1095at 1123.398 kb on - strand, within Dshi_1095at 1123.465 kb on + strand, within Dshi_1095at 1123.475 kb on + strand, within Dshi_1095at 1123.478 kb on + strand, within Dshi_1095at 1123.678 kb on + strand, within Dshi_1095at 1123.740 kb on + strand, within Dshi_1095at 1123.785 kb on + strand, within Dshi_1095at 1123.933 kb on + strandat 1123.978 kb on + strandat 1124.042 kb on + strandat 1124.215 kb on - strand, within Dshi_1096at 1124.221 kb on + strand, within Dshi_1096at 1124.353 kb on - strand, within Dshi_1096at 1124.380 kb on + strand, within Dshi_1096at 1124.414 kb on - strand, within Dshi_1096at 1124.498 kb on + strand, within Dshi_1096at 1124.498 kb on - strand, within Dshi_1096at 1124.527 kb on + strand, within Dshi_1096at 1124.616 kb on - strand, within Dshi_1096at 1124.694 kb on + strandat 1124.694 kb on + strandat 1124.694 kb on + strandat 1124.702 kb on - strandat 1124.704 kb on + strandat 1124.704 kb on + strandat 1124.884 kb on + strandat 1124.950 kb on + strandat 1124.980 kb on - strandat 1124.982 kb on + strandat 1124.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,121,498 + Dshi_1094 0.11 -0.5
1,121,498 + Dshi_1094 0.11 +1.2
1,121,498 + Dshi_1094 0.11 +2.1
1,121,699 + Dshi_1094 0.31 +1.0
1,121,810 - Dshi_1094 0.42 +0.2
1,121,843 - Dshi_1094 0.46 -0.1
1,121,947 + Dshi_1094 0.56 +1.8
1,122,022 - Dshi_1094 0.64 -0.4
1,122,032 - Dshi_1094 0.65 -0.6
1,122,069 + Dshi_1094 0.68 +0.3
1,122,396 + +0.5
1,122,415 + -0.3
1,122,434 + -0.7
1,122,434 + -1.3
1,122,442 - -0.4
1,122,442 - +0.0
1,122,442 - -2.0
1,122,443 - -2.2
1,122,462 + +0.9
1,122,889 - Dshi_1095 0.26 +1.1
1,122,889 - Dshi_1095 0.26 -0.7
1,122,988 - Dshi_1095 0.32 +2.3
1,123,039 + Dshi_1095 0.36 +0.6
1,123,088 + Dshi_1095 0.39 +1.8
1,123,127 + Dshi_1095 0.42 -0.3
1,123,182 - Dshi_1095 0.45 -0.9
1,123,211 - Dshi_1095 0.47 -0.5
1,123,323 - Dshi_1095 0.55 +0.1
1,123,335 - Dshi_1095 0.55 +0.0
1,123,398 - Dshi_1095 0.59 +0.4
1,123,398 - Dshi_1095 0.59 -0.2
1,123,465 + Dshi_1095 0.64 +1.9
1,123,475 + Dshi_1095 0.64 -1.7
1,123,478 + Dshi_1095 0.65 -0.2
1,123,678 + Dshi_1095 0.78 -0.8
1,123,740 + Dshi_1095 0.82 -0.6
1,123,785 + Dshi_1095 0.85 -0.8
1,123,933 + -1.0
1,123,978 + +1.1
1,124,042 + +0.4
1,124,215 - Dshi_1096 0.21 +0.3
1,124,221 + Dshi_1096 0.22 +0.2
1,124,353 - Dshi_1096 0.41 -0.5
1,124,380 + Dshi_1096 0.45 -0.1
1,124,414 - Dshi_1096 0.50 +0.3
1,124,498 + Dshi_1096 0.63 -0.5
1,124,498 - Dshi_1096 0.63 -0.3
1,124,527 + Dshi_1096 0.67 +1.7
1,124,616 - Dshi_1096 0.80 +0.2
1,124,694 + -0.3
1,124,694 + -0.1
1,124,694 + +0.6
1,124,702 - +0.1
1,124,704 + -0.5
1,124,704 + -3.8
1,124,884 + +0.4
1,124,950 + -0.1
1,124,980 - +0.9
1,124,982 + -3.0
1,124,985 - +1.5

Or see this region's nucleotide sequence