Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1080

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1078 and Dshi_1079 are separated by 12 nucleotidesDshi_1079 and Dshi_1080 are separated by 73 nucleotidesDshi_1080 and Dshi_1081 are separated by 27 nucleotides Dshi_1078: Dshi_1078 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 1,106,016 to 1,107,053 _1078 Dshi_1079: Dshi_1079 - phosphoribosylformylglycinamidine synthase I (RefSeq), at 1,107,066 to 1,107,737 _1079 Dshi_1080: Dshi_1080 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,107,811 to 1,109,568 _1080 Dshi_1081: Dshi_1081 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,109,596 to 1,110,921 _1081 Position (kb) 1107 1108 1109 1110Strain fitness (log2 ratio) -3 -2 -1 0 1at 1106.899 kb on + strand, within Dshi_1078at 1107.006 kb on - strandat 1107.132 kb on - strandat 1107.229 kb on + strand, within Dshi_1079at 1107.601 kb on - strand, within Dshi_1079at 1108.082 kb on - strand, within Dshi_1080at 1108.146 kb on - strand, within Dshi_1080at 1108.467 kb on + strand, within Dshi_1080at 1108.647 kb on - strand, within Dshi_1080at 1108.697 kb on + strand, within Dshi_1080at 1108.718 kb on + strand, within Dshi_1080at 1108.782 kb on + strand, within Dshi_1080at 1108.783 kb on - strand, within Dshi_1080at 1108.844 kb on + strand, within Dshi_1080at 1109.242 kb on - strand, within Dshi_1080at 1109.297 kb on + strand, within Dshi_1080at 1109.405 kb on - strandat 1109.535 kb on + strandat 1109.590 kb on + strandat 1109.598 kb on + strandat 1109.700 kb on - strandat 1109.777 kb on - strand, within Dshi_1081at 1110.003 kb on + strand, within Dshi_1081at 1110.098 kb on + strand, within Dshi_1081at 1110.146 kb on + strand, within Dshi_1081at 1110.198 kb on + strand, within Dshi_1081at 1110.287 kb on + strand, within Dshi_1081at 1110.307 kb on - strand, within Dshi_1081at 1110.387 kb on + strand, within Dshi_1081

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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1,106,899 + Dshi_1078 0.85 -1.2
1,107,006 - -0.8
1,107,132 - -1.6
1,107,229 + Dshi_1079 0.24 -0.8
1,107,601 - Dshi_1079 0.80 -1.7
1,108,082 - Dshi_1080 0.15 -0.9
1,108,146 - Dshi_1080 0.19 -0.2
1,108,467 + Dshi_1080 0.37 -2.7
1,108,647 - Dshi_1080 0.48 -3.1
1,108,697 + Dshi_1080 0.50 -0.1
1,108,718 + Dshi_1080 0.52 +0.3
1,108,782 + Dshi_1080 0.55 -1.7
1,108,783 - Dshi_1080 0.55 -0.5
1,108,844 + Dshi_1080 0.59 -1.9
1,109,242 - Dshi_1080 0.81 +0.2
1,109,297 + Dshi_1080 0.85 -1.3
1,109,405 - +0.6
1,109,535 + +0.5
1,109,590 + +0.8
1,109,598 + +0.1
1,109,700 - -1.7
1,109,777 - Dshi_1081 0.14 -2.6
1,110,003 + Dshi_1081 0.31 +0.2
1,110,098 + Dshi_1081 0.38 -0.3
1,110,146 + Dshi_1081 0.41 +0.4
1,110,198 + Dshi_1081 0.45 -0.7
1,110,287 + Dshi_1081 0.52 -0.1
1,110,307 - Dshi_1081 0.54 +1.3
1,110,387 + Dshi_1081 0.60 +0.5

Or see this region's nucleotide sequence