Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0547 and Dshi_0548 are separated by 74 nucleotides Dshi_0548 and Dshi_0549 are separated by 3 nucleotides Dshi_0549 and Dshi_0550 are separated by 68 nucleotides
Dshi_0547: Dshi_0547 - ABC transporter for Xylitol, periplasmic substrate-binding component <small>(from data)</small>, at 534,071 to 535,414
_0547
Dshi_0548: Dshi_0548 - ABC transporter for Xylitol, permease component 1 <small>(from data)</small>, at 535,489 to 536,355
_0548
Dshi_0549: Dshi_0549 - ABC transporter for Xylitol, permease component 2 <small>(from data)</small>, at 536,359 to 537,177
_0549
Dshi_0550: Dshi_0550 - transcriptional regulator, DeoR family (RefSeq), at 537,246 to 538,217
_0550
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 535.446 kb on - strand at 535.475 kb on + strand at 535.504 kb on - strand at 535.554 kb on - strand at 535.554 kb on - strand at 535.583 kb on - strand, within Dshi_0548 at 535.604 kb on + strand, within Dshi_0548 at 535.653 kb on + strand, within Dshi_0548 at 535.671 kb on - strand, within Dshi_0548 at 535.723 kb on + strand, within Dshi_0548 at 535.770 kb on + strand, within Dshi_0548 at 535.781 kb on + strand, within Dshi_0548 at 535.788 kb on - strand, within Dshi_0548 at 535.788 kb on - strand, within Dshi_0548 at 535.789 kb on - strand, within Dshi_0548 at 535.789 kb on - strand, within Dshi_0548 at 535.814 kb on + strand, within Dshi_0548 at 535.836 kb on + strand, within Dshi_0548 at 535.838 kb on + strand, within Dshi_0548 at 535.846 kb on - strand, within Dshi_0548 at 535.846 kb on - strand, within Dshi_0548 at 535.911 kb on - strand, within Dshi_0548 at 535.983 kb on - strand, within Dshi_0548 at 535.988 kb on + strand, within Dshi_0548 at 535.991 kb on + strand, within Dshi_0548 at 535.991 kb on + strand, within Dshi_0548 at 536.017 kb on + strand, within Dshi_0548 at 536.017 kb on + strand, within Dshi_0548 at 536.017 kb on + strand, within Dshi_0548 at 536.017 kb on + strand, within Dshi_0548 at 536.025 kb on - strand, within Dshi_0548 at 536.025 kb on - strand, within Dshi_0548 at 536.032 kb on - strand, within Dshi_0548 at 536.083 kb on + strand, within Dshi_0548 at 536.091 kb on - strand, within Dshi_0548 at 536.115 kb on + strand, within Dshi_0548 at 536.120 kb on + strand, within Dshi_0548 at 536.195 kb on - strand, within Dshi_0548 at 536.197 kb on - strand, within Dshi_0548 at 536.213 kb on - strand, within Dshi_0548 at 536.263 kb on - strand, within Dshi_0548 at 536.285 kb on + strand at 536.349 kb on + strand at 536.349 kb on + strand at 536.361 kb on + strand at 536.401 kb on + strand at 536.414 kb on - strand at 536.775 kb on + strand, within Dshi_0549 at 536.784 kb on - strand, within Dshi_0549 at 536.792 kb on + strand, within Dshi_0549 at 536.794 kb on - strand, within Dshi_0549 at 536.800 kb on - strand, within Dshi_0549 at 536.854 kb on - strand, within Dshi_0549 at 536.864 kb on - strand, within Dshi_0549 at 536.871 kb on + strand, within Dshi_0549 at 536.879 kb on + strand, within Dshi_0549 at 536.879 kb on + strand, within Dshi_0549 at 536.906 kb on + strand, within Dshi_0549 at 536.917 kb on + strand, within Dshi_0549 at 536.924 kb on - strand, within Dshi_0549 at 536.925 kb on - strand, within Dshi_0549 at 536.994 kb on + strand, within Dshi_0549 at 537.005 kb on + strand, within Dshi_0549 at 537.022 kb on + strand, within Dshi_0549 at 537.027 kb on + strand, within Dshi_0549 at 537.035 kb on - strand, within Dshi_0549 at 537.035 kb on - strand, within Dshi_0549 at 537.053 kb on + strand, within Dshi_0549 at 537.053 kb on + strand, within Dshi_0549 at 537.053 kb on + strand, within Dshi_0549 at 537.061 kb on - strand, within Dshi_0549 at 537.061 kb on - strand, within Dshi_0549 at 537.061 kb on - strand, within Dshi_0549 at 537.061 kb on - strand, within Dshi_0549 at 537.083 kb on - strand, within Dshi_0549 at 537.083 kb on - strand, within Dshi_0549 at 537.109 kb on + strand at 537.275 kb on - strand at 537.327 kb on + strand at 537.382 kb on + strand, within Dshi_0550 at 537.399 kb on + strand, within Dshi_0550 at 537.438 kb on + strand, within Dshi_0550 at 537.481 kb on + strand, within Dshi_0550 at 537.481 kb on + strand, within Dshi_0550 at 537.487 kb on + strand, within Dshi_0550 at 537.495 kb on - strand, within Dshi_0550 at 537.550 kb on + strand, within Dshi_0550 at 537.550 kb on + strand, within Dshi_0550 at 537.550 kb on + strand, within Dshi_0550 at 537.550 kb on + strand, within Dshi_0550 at 537.550 kb on + strand, within Dshi_0550 at 537.550 kb on + strand, within Dshi_0550 at 537.553 kb on - strand, within Dshi_0550 at 537.558 kb on - strand, within Dshi_0550 at 537.563 kb on - strand, within Dshi_0550 at 537.569 kb on + strand, within Dshi_0550 at 537.569 kb on + strand, within Dshi_0550 at 537.575 kb on - strand, within Dshi_0550 at 537.657 kb on + strand, within Dshi_0550 at 537.672 kb on + strand, within Dshi_0550 at 537.680 kb on - strand, within Dshi_0550 at 537.680 kb on - strand, within Dshi_0550 at 537.712 kb on + strand, within Dshi_0550 at 537.748 kb on + strand, within Dshi_0550 at 537.791 kb on + strand, within Dshi_0550 at 537.791 kb on + strand, within Dshi_0550 at 537.798 kb on - strand, within Dshi_0550 at 537.836 kb on + strand, within Dshi_0550 at 537.845 kb on - strand, within Dshi_0550 at 537.921 kb on - strand, within Dshi_0550 at 537.929 kb on - strand, within Dshi_0550 at 537.952 kb on - strand, within Dshi_0550 at 537.967 kb on + strand, within Dshi_0550 at 537.975 kb on - strand, within Dshi_0550 at 537.976 kb on + strand, within Dshi_0550 at 537.977 kb on + strand, within Dshi_0550 at 537.977 kb on + strand, within Dshi_0550 at 537.979 kb on - strand, within Dshi_0550 at 537.983 kb on + strand, within Dshi_0550 at 537.984 kb on - strand, within Dshi_0550 at 538.002 kb on - strand, within Dshi_0550 at 538.135 kb on - strand at 538.137 kb on + strand at 538.137 kb on + strand at 538.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 535,446 - -1.3 535,475 + -0.7 535,504 - -0.6 535,554 - -0.3 535,554 - +0.6 535,583 - Dshi_0548 0.11 -0.1 535,604 + Dshi_0548 0.13 +0.8 535,653 + Dshi_0548 0.19 +0.7 535,671 - Dshi_0548 0.21 -0.3 535,723 + Dshi_0548 0.27 -0.6 535,770 + Dshi_0548 0.32 +0.2 535,781 + Dshi_0548 0.34 +0.7 535,788 - Dshi_0548 0.34 +0.2 535,788 - Dshi_0548 0.34 +1.0 535,789 - Dshi_0548 0.35 -0.8 535,789 - Dshi_0548 0.35 -1.9 535,814 + Dshi_0548 0.37 -0.0 535,836 + Dshi_0548 0.40 -0.2 535,838 + Dshi_0548 0.40 +0.4 535,846 - Dshi_0548 0.41 -1.5 535,846 - Dshi_0548 0.41 -1.5 535,911 - Dshi_0548 0.49 -0.3 535,983 - Dshi_0548 0.57 +2.6 535,988 + Dshi_0548 0.58 +0.3 535,991 + Dshi_0548 0.58 +0.4 535,991 + Dshi_0548 0.58 +0.5 536,017 + Dshi_0548 0.61 -1.0 536,017 + Dshi_0548 0.61 -0.0 536,017 + Dshi_0548 0.61 -0.6 536,017 + Dshi_0548 0.61 -1.1 536,025 - Dshi_0548 0.62 -0.1 536,025 - Dshi_0548 0.62 -0.9 536,032 - Dshi_0548 0.63 -0.4 536,083 + Dshi_0548 0.69 -0.7 536,091 - Dshi_0548 0.69 -0.1 536,115 + Dshi_0548 0.72 -1.1 536,120 + Dshi_0548 0.73 -0.5 536,195 - Dshi_0548 0.81 +0.4 536,197 - Dshi_0548 0.82 +2.9 536,213 - Dshi_0548 0.84 -1.2 536,263 - Dshi_0548 0.89 -0.1 536,285 + -0.4 536,349 + -0.5 536,349 + +1.5 536,361 + -0.5 536,401 + -0.7 536,414 - +0.2 536,775 + Dshi_0549 0.51 -0.3 536,784 - Dshi_0549 0.52 -0.3 536,792 + Dshi_0549 0.53 -1.3 536,794 - Dshi_0549 0.53 +0.3 536,800 - Dshi_0549 0.54 -0.2 536,854 - Dshi_0549 0.60 -1.1 536,864 - Dshi_0549 0.62 +0.1 536,871 + Dshi_0549 0.63 -3.3 536,879 + Dshi_0549 0.63 -1.1 536,879 + Dshi_0549 0.63 -1.0 536,906 + Dshi_0549 0.67 -0.3 536,917 + Dshi_0549 0.68 -0.5 536,924 - Dshi_0549 0.69 -0.7 536,925 - Dshi_0549 0.69 -0.9 536,994 + Dshi_0549 0.78 +1.7 537,005 + Dshi_0549 0.79 +0.6 537,022 + Dshi_0549 0.81 +0.1 537,027 + Dshi_0549 0.82 -2.6 537,035 - Dshi_0549 0.83 -0.3 537,035 - Dshi_0549 0.83 -0.3 537,053 + Dshi_0549 0.85 +0.8 537,053 + Dshi_0549 0.85 +0.1 537,053 + Dshi_0549 0.85 +0.3 537,061 - Dshi_0549 0.86 +0.2 537,061 - Dshi_0549 0.86 -0.7 537,061 - Dshi_0549 0.86 -1.8 537,061 - Dshi_0549 0.86 -2.5 537,083 - Dshi_0549 0.88 -1.1 537,083 - Dshi_0549 0.88 -0.0 537,109 + +0.4 537,275 - -0.1 537,327 + -3.3 537,382 + Dshi_0550 0.14 -2.2 537,399 + Dshi_0550 0.16 -0.3 537,438 + Dshi_0550 0.20 -0.7 537,481 + Dshi_0550 0.24 -1.2 537,481 + Dshi_0550 0.24 -3.6 537,487 + Dshi_0550 0.25 -2.4 537,495 - Dshi_0550 0.26 -0.5 537,550 + Dshi_0550 0.31 +1.3 537,550 + Dshi_0550 0.31 -0.7 537,550 + Dshi_0550 0.31 -1.9 537,550 + Dshi_0550 0.31 -1.4 537,550 + Dshi_0550 0.31 -2.0 537,550 + Dshi_0550 0.31 -1.7 537,553 - Dshi_0550 0.32 -0.3 537,558 - Dshi_0550 0.32 +0.3 537,563 - Dshi_0550 0.33 -0.7 537,569 + Dshi_0550 0.33 -0.6 537,569 + Dshi_0550 0.33 -1.6 537,575 - Dshi_0550 0.34 -1.3 537,657 + Dshi_0550 0.42 -1.2 537,672 + Dshi_0550 0.44 -0.9 537,680 - Dshi_0550 0.45 -1.0 537,680 - Dshi_0550 0.45 -1.9 537,712 + Dshi_0550 0.48 -1.7 537,748 + Dshi_0550 0.52 -0.7 537,791 + Dshi_0550 0.56 -1.6 537,791 + Dshi_0550 0.56 -0.8 537,798 - Dshi_0550 0.57 -1.5 537,836 + Dshi_0550 0.61 -2.5 537,845 - Dshi_0550 0.62 -1.0 537,921 - Dshi_0550 0.69 -1.5 537,929 - Dshi_0550 0.70 -2.7 537,952 - Dshi_0550 0.73 -2.1 537,967 + Dshi_0550 0.74 -1.7 537,975 - Dshi_0550 0.75 -1.5 537,976 + Dshi_0550 0.75 -1.5 537,977 + Dshi_0550 0.75 -0.9 537,977 + Dshi_0550 0.75 -2.1 537,979 - Dshi_0550 0.75 -1.7 537,983 + Dshi_0550 0.76 -2.1 537,984 - Dshi_0550 0.76 -2.8 538,002 - Dshi_0550 0.78 -1.0 538,135 - -1.5 538,137 + -0.9 538,137 + -1.6 538,174 - -1.5
Or see this region's nucleotide sequence