Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0530

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0529 and Dshi_0530 overlap by 4 nucleotidesDshi_0530 and Dshi_0531 are separated by 74 nucleotides Dshi_0529: Dshi_0529 - Monosaccharide-transporting ATPase (RefSeq), at 513,283 to 514,284 _0529 Dshi_0530: Dshi_0530 - ABC transporter related (RefSeq), at 514,281 to 515,777 _0530 Dshi_0531: Dshi_0531 - ABC sugar transporter, periplasmic ligand binding protein (RefSeq), at 515,852 to 516,841 _0531 Position (kb) 514 515 516Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 513.342 kb on + strandat 513.355 kb on + strandat 513.411 kb on - strand, within Dshi_0529at 513.411 kb on - strand, within Dshi_0529at 513.466 kb on + strand, within Dshi_0529at 513.489 kb on - strand, within Dshi_0529at 513.523 kb on - strand, within Dshi_0529at 513.539 kb on + strand, within Dshi_0529at 513.580 kb on + strand, within Dshi_0529at 513.580 kb on + strand, within Dshi_0529at 513.602 kb on - strand, within Dshi_0529at 513.630 kb on - strand, within Dshi_0529at 513.650 kb on - strand, within Dshi_0529at 513.710 kb on + strand, within Dshi_0529at 513.715 kb on + strand, within Dshi_0529at 513.749 kb on + strand, within Dshi_0529at 513.757 kb on - strand, within Dshi_0529at 513.785 kb on - strand, within Dshi_0529at 513.834 kb on + strand, within Dshi_0529at 513.834 kb on + strand, within Dshi_0529at 513.885 kb on - strand, within Dshi_0529at 513.900 kb on + strand, within Dshi_0529at 513.900 kb on + strand, within Dshi_0529at 513.902 kb on + strand, within Dshi_0529at 513.910 kb on - strand, within Dshi_0529at 513.920 kb on - strand, within Dshi_0529at 513.933 kb on - strand, within Dshi_0529at 513.955 kb on + strand, within Dshi_0529at 513.962 kb on - strand, within Dshi_0529at 513.963 kb on - strand, within Dshi_0529at 513.963 kb on - strand, within Dshi_0529at 513.968 kb on - strand, within Dshi_0529at 513.975 kb on + strand, within Dshi_0529at 513.999 kb on - strand, within Dshi_0529at 514.003 kb on + strand, within Dshi_0529at 514.008 kb on + strand, within Dshi_0529at 514.011 kb on - strand, within Dshi_0529at 514.011 kb on - strand, within Dshi_0529at 514.067 kb on + strand, within Dshi_0529at 514.067 kb on - strand, within Dshi_0529at 514.080 kb on + strand, within Dshi_0529at 514.196 kb on - strandat 514.211 kb on - strandat 514.334 kb on - strandat 514.352 kb on - strandat 514.493 kb on + strand, within Dshi_0530at 514.493 kb on + strand, within Dshi_0530at 514.493 kb on + strand, within Dshi_0530at 514.501 kb on - strand, within Dshi_0530at 514.501 kb on - strand, within Dshi_0530at 514.517 kb on + strand, within Dshi_0530at 514.525 kb on - strand, within Dshi_0530at 514.525 kb on - strand, within Dshi_0530at 514.718 kb on + strand, within Dshi_0530at 514.718 kb on + strand, within Dshi_0530at 514.721 kb on - strand, within Dshi_0530at 514.721 kb on - strand, within Dshi_0530at 514.755 kb on - strand, within Dshi_0530at 514.819 kb on - strand, within Dshi_0530at 514.839 kb on + strand, within Dshi_0530at 514.844 kb on + strand, within Dshi_0530at 514.978 kb on + strand, within Dshi_0530at 514.992 kb on - strand, within Dshi_0530at 514.996 kb on - strand, within Dshi_0530at 515.047 kb on - strand, within Dshi_0530at 515.047 kb on - strand, within Dshi_0530at 515.076 kb on + strand, within Dshi_0530at 515.125 kb on + strand, within Dshi_0530at 515.125 kb on + strand, within Dshi_0530at 515.170 kb on - strand, within Dshi_0530at 515.272 kb on + strand, within Dshi_0530at 515.325 kb on - strand, within Dshi_0530at 515.474 kb on - strand, within Dshi_0530at 515.554 kb on - strand, within Dshi_0530at 515.599 kb on + strand, within Dshi_0530at 515.607 kb on - strand, within Dshi_0530at 515.617 kb on + strand, within Dshi_0530at 515.620 kb on - strand, within Dshi_0530at 515.654 kb on + strandat 515.694 kb on - strandat 515.700 kb on + strandat 515.714 kb on + strandat 515.719 kb on + strandat 515.760 kb on + strandat 515.760 kb on + strandat 515.768 kb on - strandat 515.768 kb on - strandat 515.768 kb on - strandat 515.811 kb on + strandat 515.819 kb on - strandat 515.840 kb on - strandat 515.944 kb on - strandat 515.974 kb on + strand, within Dshi_0531at 516.003 kb on + strand, within Dshi_0531at 516.029 kb on + strand, within Dshi_0531at 516.119 kb on + strand, within Dshi_0531at 516.234 kb on + strand, within Dshi_0531at 516.242 kb on - strand, within Dshi_0531at 516.262 kb on - strand, within Dshi_0531at 516.325 kb on + strand, within Dshi_0531at 516.345 kb on + strand, within Dshi_0531at 516.396 kb on + strand, within Dshi_0531at 516.527 kb on + strand, within Dshi_0531at 516.535 kb on - strand, within Dshi_0531at 516.585 kb on - strand, within Dshi_0531at 516.593 kb on - strand, within Dshi_0531at 516.649 kb on + strand, within Dshi_0531at 516.750 kb on + strandat 516.776 kb on - strandat 516.776 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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513,342 + -0.2
513,355 + -2.9
513,411 - Dshi_0529 0.13 +0.4
513,411 - Dshi_0529 0.13 +0.0
513,466 + Dshi_0529 0.18 -0.8
513,489 - Dshi_0529 0.21 -0.3
513,523 - Dshi_0529 0.24 -0.5
513,539 + Dshi_0529 0.26 -0.9
513,580 + Dshi_0529 0.30 -0.3
513,580 + Dshi_0529 0.30 -1.2
513,602 - Dshi_0529 0.32 -1.3
513,630 - Dshi_0529 0.35 -0.5
513,650 - Dshi_0529 0.37 +0.2
513,710 + Dshi_0529 0.43 +0.8
513,715 + Dshi_0529 0.43 -0.6
513,749 + Dshi_0529 0.47 -0.7
513,757 - Dshi_0529 0.47 +0.2
513,785 - Dshi_0529 0.50 -0.8
513,834 + Dshi_0529 0.55 +0.1
513,834 + Dshi_0529 0.55 +0.0
513,885 - Dshi_0529 0.60 +0.8
513,900 + Dshi_0529 0.62 +2.6
513,900 + Dshi_0529 0.62 -1.0
513,902 + Dshi_0529 0.62 +2.5
513,910 - Dshi_0529 0.63 +0.3
513,920 - Dshi_0529 0.64 -0.4
513,933 - Dshi_0529 0.65 +2.0
513,955 + Dshi_0529 0.67 -0.1
513,962 - Dshi_0529 0.68 +0.6
513,963 - Dshi_0529 0.68 +0.2
513,963 - Dshi_0529 0.68 +0.1
513,968 - Dshi_0529 0.68 +0.8
513,975 + Dshi_0529 0.69 -0.1
513,999 - Dshi_0529 0.71 +0.2
514,003 + Dshi_0529 0.72 -0.6
514,008 + Dshi_0529 0.72 -2.0
514,011 - Dshi_0529 0.73 -0.0
514,011 - Dshi_0529 0.73 +0.1
514,067 + Dshi_0529 0.78 -0.1
514,067 - Dshi_0529 0.78 +1.2
514,080 + Dshi_0529 0.80 +0.2
514,196 - -0.3
514,211 - -1.0
514,334 - +0.7
514,352 - -2.0
514,493 + Dshi_0530 0.14 +0.2
514,493 + Dshi_0530 0.14 +0.7
514,493 + Dshi_0530 0.14 -0.1
514,501 - Dshi_0530 0.15 -0.8
514,501 - Dshi_0530 0.15 -1.5
514,517 + Dshi_0530 0.16 +0.5
514,525 - Dshi_0530 0.16 -1.5
514,525 - Dshi_0530 0.16 -2.2
514,718 + Dshi_0530 0.29 -0.4
514,718 + Dshi_0530 0.29 +1.0
514,721 - Dshi_0530 0.29 -0.1
514,721 - Dshi_0530 0.29 -0.7
514,755 - Dshi_0530 0.32 +0.1
514,819 - Dshi_0530 0.36 -1.8
514,839 + Dshi_0530 0.37 -1.3
514,844 + Dshi_0530 0.38 +0.8
514,978 + Dshi_0530 0.47 +0.6
514,992 - Dshi_0530 0.47 +1.8
514,996 - Dshi_0530 0.48 +1.5
515,047 - Dshi_0530 0.51 -1.3
515,047 - Dshi_0530 0.51 +1.1
515,076 + Dshi_0530 0.53 +0.1
515,125 + Dshi_0530 0.56 +1.9
515,125 + Dshi_0530 0.56 +1.1
515,170 - Dshi_0530 0.59 +1.8
515,272 + Dshi_0530 0.66 +0.4
515,325 - Dshi_0530 0.70 +0.3
515,474 - Dshi_0530 0.80 -0.8
515,554 - Dshi_0530 0.85 +0.4
515,599 + Dshi_0530 0.88 -0.7
515,607 - Dshi_0530 0.89 -0.3
515,617 + Dshi_0530 0.89 -0.7
515,620 - Dshi_0530 0.89 -0.2
515,654 + +0.1
515,694 - -0.2
515,700 + -1.7
515,714 + +1.8
515,719 + +0.1
515,760 + +0.9
515,760 + +0.8
515,768 - +0.6
515,768 - +0.5
515,768 - +0.8
515,811 + -1.0
515,819 - +0.2
515,840 - +0.6
515,944 - -1.3
515,974 + Dshi_0531 0.12 -1.1
516,003 + Dshi_0531 0.15 +0.1
516,029 + Dshi_0531 0.18 +0.7
516,119 + Dshi_0531 0.27 -0.1
516,234 + Dshi_0531 0.39 -0.5
516,242 - Dshi_0531 0.39 +0.3
516,262 - Dshi_0531 0.41 +0.8
516,325 + Dshi_0531 0.48 -0.6
516,345 + Dshi_0531 0.50 +0.9
516,396 + Dshi_0531 0.55 -0.3
516,527 + Dshi_0531 0.68 -0.9
516,535 - Dshi_0531 0.69 -0.3
516,585 - Dshi_0531 0.74 -0.0
516,593 - Dshi_0531 0.75 +0.3
516,649 + Dshi_0531 0.81 -0.9
516,750 + -0.8
516,776 - -1.6
516,776 - -0.3

Or see this region's nucleotide sequence