Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0513 and Dshi_0514 overlap by 22 nucleotides Dshi_0514 and Dshi_0515 overlap by 4 nucleotides Dshi_0515 and Dshi_0516 are separated by 6 nucleotides
Dshi_0513: Dshi_0513 - transcriptional regulator, LuxR family (RefSeq), at 498,319 to 498,786
_0513
Dshi_0514: Dshi_0514 - response regulator receiver protein (RefSeq), at 498,765 to 498,947
_0514
Dshi_0515: Dshi_0515 - histidine kinase (RefSeq), at 498,944 to 499,843
_0515
Dshi_0516: Dshi_0516 - putative two-component sensor kinase (RefSeq), at 499,850 to 500,836
_0516
Position (kb) 498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 497.796 kb on + strand at 497.805 kb on + strand at 497.805 kb on + strand at 497.874 kb on - strand at 497.907 kb on - strand at 497.907 kb on - strand at 498.032 kb on + strand at 498.040 kb on - strand at 498.040 kb on - strand at 498.046 kb on + strand at 498.046 kb on + strand at 498.073 kb on - strand at 498.172 kb on + strand at 498.368 kb on + strand, within Dshi_0513 at 498.431 kb on + strand, within Dshi_0513 at 498.485 kb on - strand, within Dshi_0513 at 498.504 kb on + strand, within Dshi_0513 at 498.504 kb on + strand, within Dshi_0513 at 498.512 kb on - strand, within Dshi_0513 at 498.512 kb on - strand, within Dshi_0513 at 498.512 kb on - strand, within Dshi_0513 at 498.539 kb on + strand, within Dshi_0513 at 498.539 kb on + strand, within Dshi_0513 at 498.574 kb on + strand, within Dshi_0513 at 498.595 kb on + strand, within Dshi_0513 at 498.708 kb on + strand, within Dshi_0513 at 498.740 kb on - strand at 498.776 kb on - strand at 498.785 kb on + strand at 498.801 kb on + strand, within Dshi_0514 at 498.831 kb on + strand, within Dshi_0514 at 498.908 kb on - strand, within Dshi_0514 at 498.925 kb on + strand, within Dshi_0514 at 499.074 kb on - strand, within Dshi_0515 at 499.107 kb on + strand, within Dshi_0515 at 499.115 kb on - strand, within Dshi_0515 at 499.117 kb on + strand, within Dshi_0515 at 499.174 kb on + strand, within Dshi_0515 at 499.182 kb on - strand, within Dshi_0515 at 499.244 kb on + strand, within Dshi_0515 at 499.293 kb on + strand, within Dshi_0515 at 499.293 kb on + strand, within Dshi_0515 at 499.296 kb on - strand, within Dshi_0515 at 499.359 kb on - strand, within Dshi_0515 at 499.389 kb on + strand, within Dshi_0515 at 499.397 kb on - strand, within Dshi_0515 at 499.433 kb on + strand, within Dshi_0515 at 499.459 kb on - strand, within Dshi_0515 at 499.501 kb on + strand, within Dshi_0515 at 499.501 kb on + strand, within Dshi_0515 at 499.570 kb on + strand, within Dshi_0515 at 499.617 kb on - strand, within Dshi_0515 at 499.643 kb on - strand, within Dshi_0515 at 499.654 kb on - strand, within Dshi_0515 at 499.664 kb on - strand, within Dshi_0515 at 499.700 kb on + strand, within Dshi_0515 at 499.768 kb on - strand at 499.781 kb on - strand at 499.795 kb on + strand at 499.852 kb on + strand at 499.884 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 497,796 + +0.6 497,805 + +1.4 497,805 + -0.2 497,874 - +0.3 497,907 - -0.0 497,907 - +0.7 498,032 + -0.7 498,040 - +0.2 498,040 - -1.2 498,046 + +0.6 498,046 + -3.4 498,073 - +0.8 498,172 + -0.6 498,368 + Dshi_0513 0.10 -0.7 498,431 + Dshi_0513 0.24 -0.6 498,485 - Dshi_0513 0.35 -0.9 498,504 + Dshi_0513 0.40 +0.6 498,504 + Dshi_0513 0.40 +0.1 498,512 - Dshi_0513 0.41 -0.5 498,512 - Dshi_0513 0.41 -1.4 498,512 - Dshi_0513 0.41 -0.5 498,539 + Dshi_0513 0.47 +1.1 498,539 + Dshi_0513 0.47 +0.1 498,574 + Dshi_0513 0.54 -0.4 498,595 + Dshi_0513 0.59 +0.2 498,708 + Dshi_0513 0.83 -0.5 498,740 - +1.1 498,776 - -0.8 498,785 + -0.3 498,801 + Dshi_0514 0.20 +2.1 498,831 + Dshi_0514 0.36 +0.9 498,908 - Dshi_0514 0.78 +0.8 498,925 + Dshi_0514 0.87 -1.9 499,074 - Dshi_0515 0.14 +0.2 499,107 + Dshi_0515 0.18 -0.8 499,115 - Dshi_0515 0.19 -0.0 499,117 + Dshi_0515 0.19 -1.4 499,174 + Dshi_0515 0.26 +0.4 499,182 - Dshi_0515 0.26 +0.0 499,244 + Dshi_0515 0.33 +1.6 499,293 + Dshi_0515 0.39 -1.0 499,293 + Dshi_0515 0.39 +1.9 499,296 - Dshi_0515 0.39 -0.3 499,359 - Dshi_0515 0.46 +0.3 499,389 + Dshi_0515 0.49 -0.3 499,397 - Dshi_0515 0.50 -0.0 499,433 + Dshi_0515 0.54 +0.5 499,459 - Dshi_0515 0.57 -1.0 499,501 + Dshi_0515 0.62 +1.0 499,501 + Dshi_0515 0.62 -0.3 499,570 + Dshi_0515 0.70 +0.7 499,617 - Dshi_0515 0.75 -1.3 499,643 - Dshi_0515 0.78 +0.7 499,654 - Dshi_0515 0.79 -0.5 499,664 - Dshi_0515 0.80 +0.3 499,700 + Dshi_0515 0.84 +0.4 499,768 - -0.4 499,781 - -0.8 499,795 + -0.6 499,852 + -0.1 499,884 - -1.2
Or see this region's nucleotide sequence