Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0420

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0419 and Dshi_0420 are separated by 139 nucleotidesDshi_0420 and Dshi_0421 are separated by 0 nucleotides Dshi_0419: Dshi_0419 - major facilitator superfamily MFS_1 (RefSeq), at 411,331 to 412,584 _0419 Dshi_0420: Dshi_0420 - Endonuclease/exonuclease/phosphatase (RefSeq), at 412,724 to 413,434 _0420 Dshi_0421: Dshi_0421 - phospholipase D/Transphosphatidylase (RefSeq), at 413,435 to 414,979 _0421 Position (kb) 412 413 414Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 411.726 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.745 kb on + strand, within Dshi_0419at 411.747 kb on - strand, within Dshi_0419at 411.752 kb on - strand, within Dshi_0419at 411.754 kb on - strand, within Dshi_0419at 411.756 kb on + strand, within Dshi_0419at 411.790 kb on - strand, within Dshi_0419at 411.805 kb on + strand, within Dshi_0419at 411.805 kb on + strand, within Dshi_0419at 411.808 kb on - strand, within Dshi_0419at 411.813 kb on - strand, within Dshi_0419at 411.854 kb on + strand, within Dshi_0419at 411.862 kb on - strand, within Dshi_0419at 411.862 kb on - strand, within Dshi_0419at 411.878 kb on + strand, within Dshi_0419at 411.878 kb on + strand, within Dshi_0419at 411.879 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.894 kb on + strand, within Dshi_0419at 411.894 kb on + strand, within Dshi_0419at 411.902 kb on - strand, within Dshi_0419at 411.922 kb on + strand, within Dshi_0419at 411.977 kb on - strand, within Dshi_0419at 412.085 kb on + strand, within Dshi_0419at 412.116 kb on - strand, within Dshi_0419at 412.134 kb on + strand, within Dshi_0419at 412.134 kb on + strand, within Dshi_0419at 412.144 kb on - strand, within Dshi_0419at 412.163 kb on + strand, within Dshi_0419at 412.186 kb on + strand, within Dshi_0419at 412.209 kb on - strand, within Dshi_0419at 412.257 kb on - strand, within Dshi_0419at 412.264 kb on - strand, within Dshi_0419at 412.278 kb on + strand, within Dshi_0419at 412.339 kb on - strand, within Dshi_0419at 412.339 kb on - strand, within Dshi_0419at 412.347 kb on + strand, within Dshi_0419at 412.422 kb on - strand, within Dshi_0419at 412.536 kb on + strandat 412.548 kb on + strandat 412.556 kb on - strandat 412.556 kb on - strandat 412.572 kb on + strandat 412.579 kb on + strandat 412.602 kb on - strandat 412.683 kb on - strandat 412.703 kb on + strandat 412.772 kb on + strandat 412.916 kb on - strand, within Dshi_0420at 412.959 kb on + strand, within Dshi_0420at 412.959 kb on + strand, within Dshi_0420at 413.012 kb on + strand, within Dshi_0420at 413.056 kb on - strand, within Dshi_0420at 413.073 kb on + strand, within Dshi_0420at 413.088 kb on + strand, within Dshi_0420at 413.253 kb on + strand, within Dshi_0420at 413.261 kb on - strand, within Dshi_0420at 413.261 kb on - strand, within Dshi_0420at 413.266 kb on - strand, within Dshi_0420at 413.302 kb on + strand, within Dshi_0420at 413.406 kb on + strandat 413.406 kb on - strandat 413.406 kb on - strandat 413.512 kb on - strandat 413.526 kb on + strandat 413.526 kb on + strandat 413.541 kb on + strandat 413.613 kb on + strand, within Dshi_0421at 413.656 kb on + strand, within Dshi_0421at 413.713 kb on + strand, within Dshi_0421at 413.721 kb on - strand, within Dshi_0421at 413.782 kb on - strand, within Dshi_0421at 413.791 kb on + strand, within Dshi_0421at 413.881 kb on + strand, within Dshi_0421at 413.894 kb on - strand, within Dshi_0421at 413.907 kb on - strand, within Dshi_0421at 413.917 kb on + strand, within Dshi_0421at 413.959 kb on + strand, within Dshi_0421at 414.004 kb on + strand, within Dshi_0421at 414.012 kb on - strand, within Dshi_0421at 414.018 kb on - strand, within Dshi_0421at 414.056 kb on + strand, within Dshi_0421at 414.064 kb on + strand, within Dshi_0421at 414.076 kb on + strand, within Dshi_0421at 414.084 kb on - strand, within Dshi_0421at 414.170 kb on + strand, within Dshi_0421at 414.201 kb on - strand, within Dshi_0421at 414.210 kb on - strand, within Dshi_0421at 414.231 kb on + strand, within Dshi_0421at 414.248 kb on + strand, within Dshi_0421at 414.271 kb on + strand, within Dshi_0421at 414.282 kb on + strand, within Dshi_0421at 414.292 kb on + strand, within Dshi_0421at 414.295 kb on - strand, within Dshi_0421at 414.311 kb on - strand, within Dshi_0421at 414.335 kb on + strand, within Dshi_0421at 414.343 kb on - strand, within Dshi_0421at 414.343 kb on - strand, within Dshi_0421at 414.387 kb on + strand, within Dshi_0421at 414.424 kb on + strand, within Dshi_0421at 414.429 kb on + strand, within Dshi_0421

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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411,726 + Dshi_0419 0.31 -0.3
411,744 + Dshi_0419 0.33 +0.7
411,744 + Dshi_0419 0.33 +1.5
411,744 + Dshi_0419 0.33 +0.1
411,745 + Dshi_0419 0.33 +1.1
411,747 - Dshi_0419 0.33 +1.2
411,752 - Dshi_0419 0.34 +1.4
411,754 - Dshi_0419 0.34 +1.0
411,756 + Dshi_0419 0.34 +0.6
411,790 - Dshi_0419 0.37 +0.4
411,805 + Dshi_0419 0.38 +1.3
411,805 + Dshi_0419 0.38 +1.6
411,808 - Dshi_0419 0.38 -0.5
411,813 - Dshi_0419 0.38 -1.4
411,854 + Dshi_0419 0.42 -1.1
411,862 - Dshi_0419 0.42 -0.1
411,862 - Dshi_0419 0.42 +0.3
411,878 + Dshi_0419 0.44 -0.3
411,878 + Dshi_0419 0.44 -0.3
411,879 - Dshi_0419 0.44 +0.2
411,886 - Dshi_0419 0.44 -3.2
411,886 - Dshi_0419 0.44 +0.9
411,886 - Dshi_0419 0.44 +0.0
411,886 - Dshi_0419 0.44 +1.7
411,894 + Dshi_0419 0.45 +0.3
411,894 + Dshi_0419 0.45 +0.6
411,902 - Dshi_0419 0.46 -1.2
411,922 + Dshi_0419 0.47 -0.4
411,977 - Dshi_0419 0.52 -0.5
412,085 + Dshi_0419 0.60 -1.2
412,116 - Dshi_0419 0.63 -1.2
412,134 + Dshi_0419 0.64 +1.3
412,134 + Dshi_0419 0.64 -0.3
412,144 - Dshi_0419 0.65 -0.1
412,163 + Dshi_0419 0.66 +2.0
412,186 + Dshi_0419 0.68 +1.0
412,209 - Dshi_0419 0.70 -0.0
412,257 - Dshi_0419 0.74 +0.6
412,264 - Dshi_0419 0.74 +0.1
412,278 + Dshi_0419 0.76 -0.2
412,339 - Dshi_0419 0.80 -2.0
412,339 - Dshi_0419 0.80 +0.6
412,347 + Dshi_0419 0.81 -1.1
412,422 - Dshi_0419 0.87 -0.9
412,536 + -0.1
412,548 + -0.6
412,556 - +0.2
412,556 - +0.7
412,572 + +0.7
412,579 + +1.6
412,602 - +1.3
412,683 - -0.7
412,703 + -0.2
412,772 + +0.8
412,916 - Dshi_0420 0.27 +0.6
412,959 + Dshi_0420 0.33 -0.5
412,959 + Dshi_0420 0.33 -0.4
413,012 + Dshi_0420 0.41 +0.7
413,056 - Dshi_0420 0.47 +0.8
413,073 + Dshi_0420 0.49 +0.3
413,088 + Dshi_0420 0.51 -1.7
413,253 + Dshi_0420 0.74 -0.3
413,261 - Dshi_0420 0.76 -0.7
413,261 - Dshi_0420 0.76 +0.7
413,266 - Dshi_0420 0.76 +0.3
413,302 + Dshi_0420 0.81 -0.7
413,406 + +0.2
413,406 - +0.7
413,406 - +0.4
413,512 - +0.8
413,526 + -1.4
413,526 + -1.0
413,541 + -0.9
413,613 + Dshi_0421 0.12 -0.0
413,656 + Dshi_0421 0.14 -0.2
413,713 + Dshi_0421 0.18 -1.2
413,721 - Dshi_0421 0.19 +1.1
413,782 - Dshi_0421 0.22 -1.2
413,791 + Dshi_0421 0.23 -0.2
413,881 + Dshi_0421 0.29 +1.9
413,894 - Dshi_0421 0.30 +0.5
413,907 - Dshi_0421 0.31 -0.1
413,917 + Dshi_0421 0.31 -1.1
413,959 + Dshi_0421 0.34 +0.4
414,004 + Dshi_0421 0.37 +1.1
414,012 - Dshi_0421 0.37 -1.7
414,018 - Dshi_0421 0.38 -0.7
414,056 + Dshi_0421 0.40 -0.5
414,064 + Dshi_0421 0.41 +0.6
414,076 + Dshi_0421 0.41 +0.4
414,084 - Dshi_0421 0.42 -0.2
414,170 + Dshi_0421 0.48 -0.3
414,201 - Dshi_0421 0.50 -0.4
414,210 - Dshi_0421 0.50 -1.4
414,231 + Dshi_0421 0.52 +1.0
414,248 + Dshi_0421 0.53 -0.2
414,271 + Dshi_0421 0.54 +0.3
414,282 + Dshi_0421 0.55 -0.5
414,292 + Dshi_0421 0.55 -1.3
414,295 - Dshi_0421 0.56 +0.1
414,311 - Dshi_0421 0.57 +0.6
414,335 + Dshi_0421 0.58 -1.7
414,343 - Dshi_0421 0.59 +0.9
414,343 - Dshi_0421 0.59 -0.1
414,387 + Dshi_0421 0.62 -0.3
414,424 + Dshi_0421 0.64 -1.6
414,429 + Dshi_0421 0.64 +0.1

Or see this region's nucleotide sequence