Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0329 and Dshi_0330 are separated by 47 nucleotides Dshi_0330 and Dshi_R0003 are separated by 171 nucleotides Dshi_R0003 and Dshi_0331 are separated by 6 nucleotides Dshi_0331 and Dshi_0332 overlap by 4 nucleotides Dshi_0332 and Dshi_0333 are separated by 62 nucleotides
Dshi_0329: Dshi_0329 - diguanylate cyclase/phosphodiesterase (RefSeq), at 317,056 to 318,645
_0329
Dshi_0330: Dshi_0330 - PP-loop domain protein (RefSeq), at 318,693 to 319,556
_0330
Dshi_R0003: Dshi_R0003 - tRNA-Thr (RefSeq), at 319,728 to 319,803
_R0003
Dshi_0331: Dshi_0331 - protein of unknown function DUF37 (RefSeq), at 319,810 to 320,031
_0331
Dshi_0332: Dshi_0332 - ribonuclease P protein component (RefSeq), at 320,028 to 320,417
_0332
Dshi_0333: Dshi_0333 - ribosomal protein L34 (RefSeq), at 320,480 to 320,614
_0333
Position (kb) 318
319
320 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 317.745 kb on - strand, within Dshi_0329 at 317.746 kb on + strand, within Dshi_0329 at 317.749 kb on - strand, within Dshi_0329 at 317.771 kb on + strand, within Dshi_0329 at 317.779 kb on - strand, within Dshi_0329 at 317.841 kb on - strand, within Dshi_0329 at 317.848 kb on - strand, within Dshi_0329 at 317.853 kb on - strand, within Dshi_0329 at 317.870 kb on - strand, within Dshi_0329 at 317.985 kb on + strand, within Dshi_0329 at 318.006 kb on + strand, within Dshi_0329 at 318.141 kb on + strand, within Dshi_0329 at 318.263 kb on + strand, within Dshi_0329 at 318.314 kb on + strand, within Dshi_0329 at 318.323 kb on - strand, within Dshi_0329 at 318.352 kb on - strand, within Dshi_0329 at 318.491 kb on + strand at 318.524 kb on - strand at 318.607 kb on + strand at 318.615 kb on - strand at 318.617 kb on - strand at 318.648 kb on + strand at 318.672 kb on + strand at 318.724 kb on + strand at 318.734 kb on + strand at 318.812 kb on + strand, within Dshi_0330 at 318.812 kb on + strand, within Dshi_0330 at 318.943 kb on + strand, within Dshi_0330 at 319.101 kb on - strand, within Dshi_0330 at 319.204 kb on - strand, within Dshi_0330 at 319.234 kb on + strand, within Dshi_0330 at 319.330 kb on + strand, within Dshi_0330 at 319.330 kb on + strand, within Dshi_0330 at 319.361 kb on + strand at 319.562 kb on - strand at 319.661 kb on + strand at 319.674 kb on - strand at 319.780 kb on - strand, within Dshi_R0003 at 319.872 kb on + strand, within Dshi_0331 at 319.953 kb on + strand, within Dshi_0331 at 319.983 kb on + strand, within Dshi_0331
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 317,745 - Dshi_0329 0.43 +0.7 317,746 + Dshi_0329 0.43 -1.1 317,749 - Dshi_0329 0.44 +0.7 317,771 + Dshi_0329 0.45 +0.3 317,779 - Dshi_0329 0.45 -2.4 317,841 - Dshi_0329 0.49 +1.2 317,848 - Dshi_0329 0.50 -0.7 317,853 - Dshi_0329 0.50 +0.2 317,870 - Dshi_0329 0.51 +0.1 317,985 + Dshi_0329 0.58 +0.1 318,006 + Dshi_0329 0.60 +1.3 318,141 + Dshi_0329 0.68 +0.0 318,263 + Dshi_0329 0.76 +1.5 318,314 + Dshi_0329 0.79 -1.5 318,323 - Dshi_0329 0.80 +0.5 318,352 - Dshi_0329 0.82 -1.3 318,491 + -1.7 318,524 - -0.1 318,607 + +1.1 318,615 - +0.3 318,617 - -1.2 318,648 + -0.6 318,672 + -1.7 318,724 + -0.6 318,734 + +0.8 318,812 + Dshi_0330 0.14 +2.7 318,812 + Dshi_0330 0.14 -0.7 318,943 + Dshi_0330 0.29 +0.5 319,101 - Dshi_0330 0.47 -0.6 319,204 - Dshi_0330 0.59 +0.4 319,234 + Dshi_0330 0.63 +1.0 319,330 + Dshi_0330 0.74 +1.9 319,330 + Dshi_0330 0.74 +0.2 319,361 + -0.3 319,562 - +0.6 319,661 + +0.1 319,674 - +0.2 319,780 - Dshi_R0003 0.68 -0.3 319,872 + Dshi_0331 0.28 -0.1 319,953 + Dshi_0331 0.64 -3.4 319,983 + Dshi_0331 0.78 +0.1
Or see this region's nucleotide sequence