Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0311 and Dshi_0312 are separated by 56 nucleotides Dshi_0312 and Dshi_0313 are separated by 179 nucleotides Dshi_0313 and Dshi_0314 are separated by 82 nucleotides Dshi_0314 and Dshi_0315 overlap by 4 nucleotides
Dshi_0311: Dshi_0311 - transcriptional regulator, LuxR family (RefSeq), at 300,364 to 300,975
_0311
Dshi_0312: Dshi_0312 - N-acyl-L-homoserine lactone synthetase-like protein (RefSeq), at 301,032 to 301,619
_0312
Dshi_0313: Dshi_0313 - AAA ATPase central domain protein (RefSeq), at 301,799 to 303,109
_0313
Dshi_0314: Dshi_0314 - Camphor resistance CrcB protein (RefSeq), at 303,192 to 303,521
_0314
Dshi_0315: Dshi_0315 - pseudouridine synthase, RluA family (RefSeq), at 303,518 to 304,564
_0315
Position (kb)
301
302
303
304 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 300.804 kb on + strand, within Dshi_0311 at 300.915 kb on - strand at 300.965 kb on - strand at 300.977 kb on - strand at 300.978 kb on - strand at 301.022 kb on + strand at 301.112 kb on - strand, within Dshi_0312 at 301.137 kb on + strand, within Dshi_0312 at 301.182 kb on + strand, within Dshi_0312 at 301.220 kb on + strand, within Dshi_0312 at 301.239 kb on - strand, within Dshi_0312 at 301.323 kb on - strand, within Dshi_0312 at 301.436 kb on - strand, within Dshi_0312 at 301.453 kb on - strand, within Dshi_0312 at 301.479 kb on - strand, within Dshi_0312 at 301.604 kb on - strand at 301.604 kb on - strand at 301.636 kb on + strand at 301.636 kb on + strand at 301.777 kb on + strand at 301.808 kb on - strand at 301.884 kb on + strand at 301.903 kb on + strand at 302.083 kb on + strand, within Dshi_0313 at 302.267 kb on + strand, within Dshi_0313 at 302.275 kb on - strand, within Dshi_0313 at 302.613 kb on - strand, within Dshi_0313 at 302.636 kb on - strand, within Dshi_0313 at 302.638 kb on - strand, within Dshi_0313 at 302.721 kb on + strand, within Dshi_0313 at 302.785 kb on + strand, within Dshi_0313 at 302.929 kb on + strand, within Dshi_0313 at 302.932 kb on - strand, within Dshi_0313 at 302.937 kb on + strand, within Dshi_0313 at 302.942 kb on + strand, within Dshi_0313 at 302.948 kb on + strand, within Dshi_0313 at 303.029 kb on + strand at 303.408 kb on - strand, within Dshi_0314 at 303.442 kb on + strand, within Dshi_0314 at 303.497 kb on - strand at 303.672 kb on - strand, within Dshi_0315 at 303.837 kb on - strand, within Dshi_0315 at 303.981 kb on - strand, within Dshi_0315
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 300,804 + Dshi_0311 0.72 +1.2 300,915 - +0.4 300,965 - +0.4 300,977 - -1.8 300,978 - +2.4 301,022 + +0.4 301,112 - Dshi_0312 0.14 -0.1 301,137 + Dshi_0312 0.18 -0.3 301,182 + Dshi_0312 0.26 +0.5 301,220 + Dshi_0312 0.32 -0.3 301,239 - Dshi_0312 0.35 -0.7 301,323 - Dshi_0312 0.49 -0.6 301,436 - Dshi_0312 0.69 +0.5 301,453 - Dshi_0312 0.72 -1.0 301,479 - Dshi_0312 0.76 -0.6 301,604 - -2.0 301,604 - +1.1 301,636 + -0.5 301,636 + +0.9 301,777 + -0.8 301,808 - +1.3 301,884 + -1.9 301,903 + +0.8 302,083 + Dshi_0313 0.22 -0.5 302,267 + Dshi_0313 0.36 +0.9 302,275 - Dshi_0313 0.36 +0.3 302,613 - Dshi_0313 0.62 +1.6 302,636 - Dshi_0313 0.64 -0.9 302,638 - Dshi_0313 0.64 +0.2 302,721 + Dshi_0313 0.70 -0.5 302,785 + Dshi_0313 0.75 -0.7 302,929 + Dshi_0313 0.86 -1.1 302,932 - Dshi_0313 0.86 +1.1 302,937 + Dshi_0313 0.87 -1.8 302,942 + Dshi_0313 0.87 +0.9 302,948 + Dshi_0313 0.88 +0.2 303,029 + +0.0 303,408 - Dshi_0314 0.65 -0.9 303,442 + Dshi_0314 0.76 +1.3 303,497 - +1.8 303,672 - Dshi_0315 0.15 -1.1 303,837 - Dshi_0315 0.30 -0.4 303,981 - Dshi_0315 0.44 +0.1
Or see this region's nucleotide sequence