Experiment: m.b. Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0140 and Dshi_0141 overlap by 11 nucleotides Dshi_0141 and Dshi_0142 are separated by 163 nucleotides Dshi_0142 and Dshi_0143 are separated by 314 nucleotides Dshi_0143 and Dshi_0144 are separated by 34 nucleotides
Dshi_0140: Dshi_0140 - VacJ family lipoprotein (RefSeq), at 139,098 to 139,919
_0140
Dshi_0141: Dshi_0141 - toluene tolerance family protein (RefSeq), at 139,909 to 140,529
_0141
Dshi_0142: Dshi_0142 - penicillin-binding protein, 1A family (RefSeq), at 140,693 to 142,882
_0142
Dshi_0143: Dshi_0143 - nitrogen regulatory protein P-II (RefSeq), at 143,197 to 143,535
_0143
Dshi_0144: Dshi_0144 - ammonium transporter (RefSeq), at 143,570 to 144,883
_0144
Position (kb)
140
141
142
143 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 139.709 kb on - strand at 139.843 kb on + strand at 139.851 kb on - strand at 139.880 kb on + strand at 139.885 kb on + strand at 139.976 kb on + strand, within Dshi_0141 at 139.984 kb on - strand, within Dshi_0141 at 139.994 kb on - strand, within Dshi_0141 at 139.994 kb on - strand, within Dshi_0141 at 140.210 kb on + strand, within Dshi_0141 at 140.251 kb on - strand, within Dshi_0141 at 140.255 kb on + strand, within Dshi_0141 at 140.433 kb on - strand, within Dshi_0141 at 140.546 kb on - strand at 140.691 kb on + strand at 140.834 kb on - strand at 141.533 kb on - strand, within Dshi_0142 at 141.739 kb on - strand, within Dshi_0142 at 142.372 kb on + strand, within Dshi_0142 at 142.841 kb on - strand at 142.917 kb on + strand at 142.942 kb on - strand at 142.950 kb on - strand at 142.979 kb on - strand at 143.005 kb on - strand at 143.187 kb on + strand at 143.300 kb on - strand, within Dshi_0143 at 143.743 kb on + strand, within Dshi_0144 at 143.830 kb on - strand, within Dshi_0144
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml remove 139,709 - +0.1 139,843 + -0.6 139,851 - -0.9 139,880 + -2.2 139,885 + -1.4 139,976 + Dshi_0141 0.11 +0.3 139,984 - Dshi_0141 0.12 -0.8 139,994 - Dshi_0141 0.14 +0.7 139,994 - Dshi_0141 0.14 -1.6 140,210 + Dshi_0141 0.48 -2.8 140,251 - Dshi_0141 0.55 -0.9 140,255 + Dshi_0141 0.56 +0.1 140,433 - Dshi_0141 0.84 +1.6 140,546 - +0.5 140,691 + -0.3 140,834 - +0.3 141,533 - Dshi_0142 0.38 -1.5 141,739 - Dshi_0142 0.48 -3.3 142,372 + Dshi_0142 0.77 -1.7 142,841 - -0.9 142,917 + -1.9 142,942 - -0.9 142,950 - -1.3 142,979 - -1.2 143,005 - +0.8 143,187 + +0.2 143,300 - Dshi_0143 0.30 +1.7 143,743 + Dshi_0144 0.13 -0.1 143,830 - Dshi_0144 0.20 -0.4
Or see this region's nucleotide sequence